Variant report

Variant	rs11974545
Chromosome Location	chr7:117296630-117296631
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115847372-115857098..7:117296107-117301288	Hela-S3	cervix:
2	7:115890993-115892266..7:117296107-117301288	H1-hESC	embryonic stem cell:	embryo
3	chr7:117289455..117292221-chr7:117295300..117297100,2	K562	blood:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10226907	0.86[ASN][1000 genomes]
rs10231905	0.86[ASN][1000 genomes]
rs10244694	0.86[ASN][1000 genomes]
rs10249419	1.00[ASN][1000 genomes]
rs10266116	0.86[ASN][1000 genomes]
rs10272233	0.86[ASN][1000 genomes]
rs10276533	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs10278481	1.00[ASN][1000 genomes]
rs1042180	0.80[GIH][hapmap];0.85[TSI][hapmap];0.86[ASN][1000 genomes]
rs10441245	0.86[ASN][1000 genomes]
rs10953848	1.00[ASN][1000 genomes]
rs11764070	0.86[ASN][1000 genomes]
rs11767185	1.00[ASN][1000 genomes]
rs11768272	0.80[GIH][hapmap];1.00[ASN][1000 genomes]
rs12534210	1.00[ASN][1000 genomes]
rs12534233	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366912	0.86[ASN][1000 genomes]
rs1429563	0.86[ASN][1000 genomes]
rs1429568	0.87[GIH][hapmap];0.96[TSI][hapmap];0.86[ASN][1000 genomes]
rs1468262	0.86[ASN][1000 genomes]
rs1594189	0.86[ASN][1000 genomes]
rs17140297	0.82[TSI][hapmap];0.86[ASN][1000 genomes]
rs17140352	1.00[ASN][1000 genomes]
rs17452984	0.86[ASN][1000 genomes]
rs17549557	0.87[GIH][hapmap];0.96[TSI][hapmap];0.86[ASN][1000 genomes]
rs17550204	0.86[ASN][1000 genomes]
rs17550567	1.00[ASN][1000 genomes]
rs1800136	0.87[GIH][hapmap];0.96[TSI][hapmap];0.86[ASN][1000 genomes]
rs1966352	1.00[ASN][1000 genomes]
rs2059938	1.00[ASN][1000 genomes]
rs2079178	1.00[ASN][1000 genomes]
rs213979	0.95[EUR][1000 genomes]
rs213980	0.89[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs213981	0.89[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs213986	0.83[GIH][hapmap];0.96[TSI][hapmap]
rs213988	1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs213989	0.95[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs214159	0.86[ASN][1000 genomes]
rs214163	0.95[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214164	0.95[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2188150	0.95[CEU][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2518879	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs34331324	0.86[ASN][1000 genomes]
rs34374846	0.86[ASN][1000 genomes]
rs34541842	1.00[ASN][1000 genomes]
rs34637736	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34665848	1.00[ASN][1000 genomes]
rs34927137	0.86[ASN][1000 genomes]
rs35050470	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35216437	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35244428	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35292549	0.86[ASN][1000 genomes]
rs35454880	1.00[ASN][1000 genomes]
rs35871198	1.00[ASN][1000 genomes]
rs35941557	0.86[ASN][1000 genomes]
rs4500028	1.00[ASN][1000 genomes]
rs4727855	0.87[GIH][hapmap];0.96[TSI][hapmap]
rs4730793	0.86[ASN][1000 genomes]
rs4730794	0.86[ASN][1000 genomes]
rs4730795	1.00[ASN][1000 genomes]
rs4730797	0.80[GIH][hapmap];1.00[ASN][1000 genomes]
rs4730798	1.00[ASN][1000 genomes]
rs4730799	0.86[ASN][1000 genomes]
rs4730801	1.00[ASN][1000 genomes]
rs4730802	1.00[ASN][1000 genomes]
rs6466618	0.86[ASN][1000 genomes]
rs6943317	0.86[ASN][1000 genomes]
rs6973257	0.86[ASN][1000 genomes]
rs6977789	0.80[GIH][hapmap];1.00[ASN][1000 genomes]
rs6980032	0.95[TSI][hapmap];0.86[ASN][1000 genomes]
rs739797	1.00[ASN][1000 genomes]
rs739798	1.00[ASN][1000 genomes]
rs757278	1.00[ASN][1000 genomes]
rs7779353	0.86[ASN][1000 genomes]
rs7796211	0.86[ASN][1000 genomes]
rs7804816	0.80[GIH][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117288800-117297400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:117292000-117301200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:117292600-117298400	Weak transcription	Dnd41	blood
5	chr7:117294600-117297400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:117294800-117296800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr7:117294800-117309800	Weak transcription	Pancreas	Pancrea
8	chr7:117295000-117299200	Enhancers	Fetal Intestine Small	intestine
9	chr7:117295400-117304400	Weak transcription	Hela-S3	cervix
10	chr7:117296000-117296800	Weak transcription	Colonic Mucosa	Colon
11	chr7:117296000-117299200	Weak transcription	Small Intestine	intestine
12	chr7:117296200-117298400	Enhancers	Fetal Intestine Large	intestine
13	chr7:117296400-117297400	Weak transcription	Stomach Mucosa	stomach
14	chr7:117296600-117306400	Weak transcription	Rectal Mucosa Donor 29	rectum

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