Variant report

Variant	rs213986
Chromosome Location	chr7:117259946-117259947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117259697..117261573-chr7:117270722..117272791,2	MCF-7	breast:
2	chr7:117259386..117261443-chr7:117261641..117263539,2	MCF-7	breast:
3	chr7:117259654..117260333-chr7:117313702..117314524,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10266116	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10272233	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10276533	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs1042180	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10441245	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11764070	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11768272	0.82[CEU][hapmap];0.80[GIH][hapmap]
rs11974545	0.83[GIH][hapmap];0.96[TSI][hapmap]
rs1366912	0.94[EUR][1000 genomes]
rs1429568	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1594189	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17140297	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17140352	0.82[CEU][hapmap]
rs17549557	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1800136	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2059938	0.81[EUR][1000 genomes]
rs213980	0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs213981	0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs213988	0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.83[ASN][1000 genomes]
rs213989	0.81[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs214159	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214163	0.81[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs214164	0.81[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2188150	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2213958	1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2518879	1.00[JPT][hapmap]
rs34331324	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34637736	0.96[EUR][1000 genomes]
rs34927137	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35292549	0.94[EUR][1000 genomes]
rs4727855	1.00[CEU][hapmap];0.83[CHD][hapmap];0.96[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs4730793	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730794	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730795	0.84[EUR][1000 genomes]
rs4730798	0.82[CEU][hapmap]
rs4730799	0.82[CEU][hapmap]
rs6943317	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6977789	0.80[GIH][hapmap]
rs6980032	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7804816	0.82[CEU][hapmap];0.80[GIH][hapmap];0.85[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs213986	CTTNBP2	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117253000-117267200	Weak transcription	Dnd41	blood
3	chr7:117257000-117263600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:117257600-117270000	Weak transcription	Stomach Mucosa	stomach
5	chr7:117258000-117260800	Weak transcription	Fetal Intestine Small	intestine
6	chr7:117258000-117268600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr7:117258200-117286600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr7:117259200-117260600	Enhancers	Hela-S3	cervix
9	chr7:117259600-117260000	Enhancers	Fetal Intestine Large	intestine
10	chr7:117259600-117260200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:117259800-117260000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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