Variant report

Variant	rs17140297
Chromosome Location	chr7:117300259-117300260
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117289752..117291656-chr7:117298302..117301192,2	MCF-7	breast:
2	7:115847372-115857098..7:117296107-117301288	Hela-S3	cervix:
3	7:115890993-115892266..7:117296107-117301288	H1-hESC	embryonic stem cell:	embryo
4	chr7:117294388..117296596-chr7:117298428..117301333,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10249419	0.86[ASN][1000 genomes]
rs10266116	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272233	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276533	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs10278481	0.86[ASN][1000 genomes]
rs1042180	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];0.87[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10441245	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11764070	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767185	0.86[ASN][1000 genomes]
rs11768272	0.82[CEU][hapmap];0.86[ASN][1000 genomes]
rs11974545	0.82[TSI][hapmap];0.86[ASN][1000 genomes]
rs12534210	0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1429568	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594189	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140352	0.82[CEU][hapmap];0.86[ASN][1000 genomes]
rs17549557	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550567	0.86[ASN][1000 genomes]
rs1800136	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2079178	0.86[ASN][1000 genomes]
rs213980	1.00[JPT][hapmap];0.82[TSI][hapmap]
rs213981	1.00[JPT][hapmap];0.86[TSI][hapmap]
rs213986	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs213988	1.00[JPT][hapmap];0.82[TSI][hapmap]
rs213989	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs214159	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214163	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.86[ASN][1000 genomes]
rs214164	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs2188150	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs2213958	1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs2518879	1.00[JPT][hapmap]
rs34331324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs34927137	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4727855	0.92[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730793	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730794	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730795	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730797	0.86[ASN][1000 genomes]
rs4730798	0.82[CEU][hapmap];0.86[ASN][1000 genomes]
rs4730799	0.81[CEU][hapmap]
rs4730801	0.86[ASN][1000 genomes]
rs4730802	0.86[ASN][1000 genomes]
rs6943317	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977789	0.86[ASN][1000 genomes]
rs6980032	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739797	0.86[ASN][1000 genomes]
rs739798	0.86[ASN][1000 genomes]
rs757278	0.86[ASN][1000 genomes]
rs7804816	0.82[CEU][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117292000-117301200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:117294800-117309800	Weak transcription	Pancreas	Pancrea
4	chr7:117295400-117304400	Weak transcription	Hela-S3	cervix
5	chr7:117296600-117306400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:117298000-117300800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:117298400-117301800	Enhancers	Dnd41	blood
8	chr7:117298800-117301600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr7:117299200-117300600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:117299200-117300800	Weak transcription	Fetal Intestine Small	intestine
11	chr7:117299200-117301000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:117299400-117300400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:117299400-117300400	Enhancers	Fetal Intestine Large	intestine
14	chr7:117299400-117300600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:117299400-117301600	Weak transcription	Small Intestine	intestine
16	chr7:117299800-117301200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:117300000-117300400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:117300000-117304400	Weak transcription	A549	lung

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