Variant report

Variant	rs34927137
Chromosome Location	chr7:117294730-117294731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117294388..117296596-chr7:117298428..117301333,3	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10249419	0.86[ASN][1000 genomes]
rs10266116	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272233	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278481	0.86[ASN][1000 genomes]
rs1042180	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10441245	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11764070	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767185	0.86[ASN][1000 genomes]
rs11768272	0.86[ASN][1000 genomes]
rs11974545	0.86[ASN][1000 genomes]
rs12534210	0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1429568	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594189	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140297	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140352	0.86[ASN][1000 genomes]
rs17549557	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550567	0.86[ASN][1000 genomes]
rs1800136	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2079178	0.86[ASN][1000 genomes]
rs213986	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214159	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214163	0.86[ASN][1000 genomes]
rs2213958	0.94[EUR][1000 genomes]
rs34331324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4727855	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4730793	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730794	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730795	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730797	0.86[ASN][1000 genomes]
rs4730798	0.86[ASN][1000 genomes]
rs4730801	0.86[ASN][1000 genomes]
rs4730802	0.86[ASN][1000 genomes]
rs6943317	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977789	0.86[ASN][1000 genomes]
rs6980032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739797	0.86[ASN][1000 genomes]
rs739798	0.86[ASN][1000 genomes]
rs757278	0.86[ASN][1000 genomes]
rs7804816	0.86[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117288800-117297400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:117292000-117301200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:117292600-117298400	Weak transcription	Dnd41	blood
5	chr7:117292800-117294800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:117293000-117294800	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr7:117294000-117294800	Genic enhancers	Pancreas	Pancrea
8	chr7:117294200-117295000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:117294200-117295000	Enhancers	Colonic Mucosa	Colon
10	chr7:117294400-117295000	Strong transcription	Fetal Intestine Large	intestine
11	chr7:117294400-117295000	ZNF genes & repeats	Fetal Intestine Small	intestine
12	chr7:117294600-117294800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr7:117294600-117295400	Weak transcription	Small Intestine	intestine
14	chr7:117294600-117295400	Enhancers	Hela-S3	cervix
15	chr7:117294600-117297400	Weak transcription	Duodenum Mucosa	Duodenum

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