Variant report

Variant	rs6943317
Chromosome Location	chr7:117313645-117313646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117257272..117259077-chr7:117312247..117314442,2	MCF-7	breast:
2	chr7:117308138..117311629-chr7:117312851..117315783,3	MCF-7	breast:
3	chr7:117305228..117309345-chr7:117311751..117315274,4	MCF-7	breast:
4	chr7:117098897..117099731-chr7:117313584..117314351,4	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10226907	1.00[JPT][hapmap]
rs10230544	1.00[JPT][hapmap]
rs10231905	1.00[JPT][hapmap]
rs10234869	1.00[JPT][hapmap]
rs10242695	1.00[JPT][hapmap]
rs10247163	1.00[JPT][hapmap]
rs10249419	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10254610	1.00[JPT][hapmap]
rs10258815	1.00[JPT][hapmap]
rs10266116	0.95[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274022	1.00[JPT][hapmap]
rs10278481	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1042180	0.95[CEU][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10441245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11764070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767185	0.82[CEU][hapmap];0.86[ASN][1000 genomes]
rs11768272	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11974545	0.86[ASN][1000 genomes]
rs12534210	0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1429568	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468262	1.00[JPT][hapmap]
rs1594189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140297	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140352	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17549557	0.95[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550204	1.00[JPT][hapmap]
rs17550567	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1800136	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2079178	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs213980	0.81[CEU][hapmap]
rs213981	0.81[CEU][hapmap]
rs213986	0.95[CEU][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214159	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214163	0.86[ASN][1000 genomes]
rs2189388	1.00[JPT][hapmap]
rs2193258	1.00[JPT][hapmap]
rs2213958	0.90[EUR][1000 genomes]
rs34331324	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs34927137	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4727855	0.95[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4730793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730794	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730795	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730798	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730799	1.00[JPT][hapmap]
rs4730801	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730802	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6466624	1.00[JPT][hapmap]
rs6967118	1.00[JPT][hapmap]
rs6977789	0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6978213	1.00[JPT][hapmap]
rs6980032	0.95[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs739798	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs757278	0.86[ASN][1000 genomes]
rs7779353	1.00[JPT][hapmap]
rs7796168	1.00[JPT][hapmap]
rs7796211	1.00[JPT][hapmap]
rs7804816	0.87[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs929668	1.00[JPT][hapmap]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117306200-117315600	Weak transcription	Fetal Lung	lung
2	chr7:117310600-117314600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:117312400-117317200	Enhancers	Fetal Intestine Large	intestine
4	chr7:117312600-117314000	Enhancers	Hela-S3	cervix
5	chr7:117312800-117314000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
6	chr7:117312800-117314800	Enhancers	Liver	Liver
7	chr7:117312800-117317400	Enhancers	Fetal Intestine Small	intestine
8	chr7:117313000-117314000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr7:117313000-117314000	Enhancers	Duodenum Mucosa	Duodenum
10	chr7:117313000-117316400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:117313200-117313800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr7:117313200-117314000	Flanking Active TSS	Brain Cingulate Gyrus	brain
13	chr7:117313200-117314200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr7:117313200-117314200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:117313200-117314200	Flanking Active TSS	Brain Hippocampus Middle	brain
16	chr7:117313200-117314400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr7:117313200-117314400	Enhancers	Fetal Heart	heart
18	chr7:117313200-117314600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:117313200-117315400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:117313200-117316600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:117313200-117317000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr7:117313400-117313800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:117313400-117313800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:117313400-117313800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:117313400-117313800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:117313400-117313800	Flanking Active TSS	Colonic Mucosa	Colon
27	chr7:117313400-117313800	Enhancers	Fetal Kidney	kidney
28	chr7:117313400-117313800	Enhancers	Placenta	Placenta
29	chr7:117313400-117313800	Enhancers	Gastric	stomach
30	chr7:117313400-117313800	Enhancers	Left Ventricle	heart
31	chr7:117313400-117313800	Enhancers	Pancreas	Pancrea
32	chr7:117313400-117313800	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr7:117313400-117313800	ZNF genes & repeats	Right Atrium	heart
34	chr7:117313400-117314000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
35	chr7:117313400-117314000	Active TSS	H9 Cell Line	embryonic stem cell
36	chr7:117313400-117314000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr7:117313400-117314000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr7:117313400-117314000	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr7:117313400-117314000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr7:117313400-117314000	Active TSS	Brain Substantia Nigra	brain
41	chr7:117313400-117314000	Active TSS	Esophagus	oesophagus
42	chr7:117313400-117314000	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr7:117313400-117314200	Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr7:117313400-117314400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
45	chr7:117313400-117315000	Enhancers	Stomach Mucosa	stomach
46	chr7:117313400-117315000	Enhancers	Dnd41	blood
47	chr7:117313600-117313800	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:117313600-117313800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr7:117313600-117313800	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr7:117313600-117313800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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