Variant report

Variant	rs10258815
Chromosome Location	chr7:117401398-117401399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10226236	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs10226907	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10230544	0.96[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10231905	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs10234869	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10242695	1.00[JPT][hapmap]
rs10247163	0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10249419	0.96[CEU][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap]
rs10249988	0.85[EUR][1000 genomes]
rs10254610	0.96[CEU][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274022	1.00[JPT][hapmap]
rs10278481	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs11768272	1.00[JPT][hapmap]
rs1468262	1.00[JPT][hapmap]
rs17140352	1.00[JPT][hapmap]
rs17550204	1.00[JPT][hapmap]
rs17550567	1.00[JPT][hapmap]
rs2079178	1.00[JPT][hapmap]
rs2111204	1.00[CHD][hapmap]
rs2189388	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193258	1.00[JPT][hapmap]
rs4730797	1.00[JPT][hapmap]
rs4730798	1.00[JPT][hapmap]
rs4730799	1.00[JPT][hapmap]
rs4730801	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs4730802	1.00[JPT][hapmap]
rs4730803	0.83[ASN][1000 genomes]
rs6466624	1.00[JPT][hapmap]
rs6960332	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967118	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6977789	1.00[JPT][hapmap]
rs6978213	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739797	1.00[JPT][hapmap]
rs739798	0.96[CEU][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap]
rs757278	0.81[AMR][1000 genomes]
rs7779353	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs7796168	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs7796211	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs7804816	1.00[JPT][hapmap]
rs929668	0.83[CHD][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:117359200-117402600	Weak transcription	Spleen	Spleen
4	chr7:117365600-117407000	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:117375000-117410800	Weak transcription	Left Ventricle	heart
6	chr7:117375200-117431600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:117375400-117402600	Weak transcription	Esophagus	oesophagus
8	chr7:117375800-117406800	Weak transcription	Fetal Kidney	kidney
9	chr7:117379600-117404000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:117385400-117410600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:117387400-117410400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr7:117391200-117413400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:117394200-117402000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:117394600-117402200	Weak transcription	Fetal Heart	heart
15	chr7:117394600-117402400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:117394800-117402600	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:117394800-117403000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr7:117395000-117401800	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr7:117396400-117450200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:117396600-117431200	Weak transcription	Aorta	Aorta
21	chr7:117396800-117402600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:117396800-117421000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr7:117397000-117431200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:117397000-117431200	Weak transcription	Fetal Intestine Small	intestine
25	chr7:117397000-117431600	Weak transcription	Ovary	ovary
26	chr7:117397200-117402200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr7:117397200-117402600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:117397200-117421400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:117397200-117431200	Weak transcription	Pancreas	Pancrea
30	chr7:117398600-117407400	Weak transcription	Brain Germinal Matrix	brain
31	chr7:117398600-117431200	Weak transcription	Fetal Stomach	stomach
32	chr7:117399000-117405400	Weak transcription	Fetal Brain Male	brain
33	chr7:117399000-117412000	Weak transcription	NHLF	lung
34	chr7:117399400-117412000	Weak transcription	Right Atrium	heart
35	chr7:117399800-117401800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:117400000-117406600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr7:117400400-117406800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr7:117400600-117402200	Weak transcription	Fetal Lung	lung
39	chr7:117400600-117410400	Weak transcription	Adipose Nuclei	Adipose
40	chr7:117400800-117401400	Enhancers	Brain Substantia Nigra	brain
41	chr7:117400800-117410200	Weak transcription	Fetal Brain Female	brain
42	chr7:117400800-117431200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr7:117401000-117401400	Strong transcription	Rectal Smooth Muscle	rectum
44	chr7:117401000-117409000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr7:117401200-117402000	Weak transcription	Brain Angular Gyrus	brain
46	chr7:117401200-117406600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr7:117401200-117406600	Weak transcription	Brain Hippocampus Middle	brain
48	chr7:117401200-117407000	Weak transcription	Brain Anterior Caudate	brain

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