Variant report

Variant	rs6967118
Chromosome Location	chr7:117400970-117400971
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10226907	1.00[JPT][hapmap]
rs10230544	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10231905	1.00[JPT][hapmap]
rs10234869	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10242695	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10247163	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249419	1.00[JPT][hapmap]
rs10254610	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10258815	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10274022	1.00[JPT][hapmap]
rs10278481	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs11768272	1.00[JPT][hapmap]
rs1468262	1.00[JPT][hapmap]
rs17140352	1.00[JPT][hapmap]
rs17550204	1.00[JPT][hapmap]
rs17550567	1.00[JPT][hapmap]
rs2079178	1.00[JPT][hapmap]
rs2189388	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2193258	1.00[JPT][hapmap]
rs4730797	1.00[JPT][hapmap]
rs4730798	1.00[JPT][hapmap]
rs4730799	1.00[JPT][hapmap]
rs4730801	1.00[JPT][hapmap]
rs4730802	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs4730803	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466624	1.00[JPT][hapmap]
rs6960332	0.83[ASN][1000 genomes]
rs6977789	1.00[JPT][hapmap]
rs6978213	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs739797	1.00[JPT][hapmap]
rs739798	1.00[JPT][hapmap]
rs7779353	1.00[JPT][hapmap]
rs7796168	1.00[JPT][hapmap]
rs7796211	1.00[JPT][hapmap]
rs7804816	1.00[JPT][hapmap]
rs929668	1.00[JPT][hapmap]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:117359200-117402600	Weak transcription	Spleen	Spleen
4	chr7:117363200-117401000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:117365600-117407000	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:117375000-117410800	Weak transcription	Left Ventricle	heart
7	chr7:117375200-117431600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:117375400-117402600	Weak transcription	Esophagus	oesophagus
9	chr7:117375800-117406800	Weak transcription	Fetal Kidney	kidney
10	chr7:117379600-117404000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:117385400-117410600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:117387400-117410400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:117391200-117413400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr7:117393600-117401000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:117394000-117401200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:117394200-117402000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:117394600-117402200	Weak transcription	Fetal Heart	heart
18	chr7:117394600-117402400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:117394800-117402600	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:117394800-117403000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:117395000-117401800	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr7:117396400-117450200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:117396600-117431200	Weak transcription	Aorta	Aorta
24	chr7:117396800-117402600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:117396800-117421000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:117397000-117431200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:117397000-117431200	Weak transcription	Fetal Intestine Small	intestine
28	chr7:117397000-117431600	Weak transcription	Ovary	ovary
29	chr7:117397200-117402200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr7:117397200-117402600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:117397200-117421400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:117397200-117431200	Weak transcription	Pancreas	Pancrea
33	chr7:117398600-117401200	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:117398600-117407400	Weak transcription	Brain Germinal Matrix	brain
35	chr7:117398600-117431200	Weak transcription	Fetal Stomach	stomach
36	chr7:117398800-117401000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:117399000-117405400	Weak transcription	Fetal Brain Male	brain
38	chr7:117399000-117412000	Weak transcription	NHLF	lung
39	chr7:117399400-117412000	Weak transcription	Right Atrium	heart
40	chr7:117399600-117401200	Enhancers	Brain Angular Gyrus	brain
41	chr7:117399600-117401200	Enhancers	Brain Anterior Caudate	brain
42	chr7:117399600-117401200	Enhancers	Brain Hippocampus Middle	brain
43	chr7:117399800-117401800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:117400000-117406600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr7:117400400-117406800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:117400600-117401200	Enhancers	NHDF-Ad	bronchial
47	chr7:117400600-117402200	Weak transcription	Fetal Lung	lung
48	chr7:117400600-117410400	Weak transcription	Adipose Nuclei	Adipose
49	chr7:117400800-117401400	Enhancers	Brain Substantia Nigra	brain
50	chr7:117400800-117410200	Weak transcription	Fetal Brain Female	brain

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