Variant report

Variant	rs10226236
Chromosome Location	chr7:117449844-117449845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117446014..117448136-chr7:117449356..117451323,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10226907	1.00[JPT][hapmap]
rs10230544	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs10231905	1.00[JPT][hapmap]
rs10234869	1.00[JPT][hapmap]
rs10242695	1.00[JPT][hapmap]
rs10247163	1.00[JPT][hapmap]
rs10249419	1.00[JPT][hapmap]
rs10254610	1.00[JPT][hapmap]
rs10258815	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs10274022	1.00[JPT][hapmap]
rs10278481	1.00[JPT][hapmap]
rs11768272	1.00[JPT][hapmap]
rs1468262	1.00[JPT][hapmap]
rs17140352	1.00[JPT][hapmap]
rs17550204	1.00[JPT][hapmap]
rs17550567	1.00[JPT][hapmap]
rs2079178	1.00[JPT][hapmap]
rs2111204	0.92[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2189388	1.00[JPT][hapmap]
rs2193258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402264	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4730797	1.00[JPT][hapmap]
rs4730798	1.00[JPT][hapmap]
rs4730799	1.00[JPT][hapmap]
rs4730801	1.00[JPT][hapmap]
rs4730802	1.00[JPT][hapmap]
rs6466624	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6967118	1.00[JPT][hapmap]
rs6977789	1.00[JPT][hapmap]
rs6978213	1.00[JPT][hapmap]
rs739797	1.00[JPT][hapmap]
rs739798	1.00[JPT][hapmap]
rs7779353	1.00[JPT][hapmap]
rs7796168	1.00[JPT][hapmap]
rs7796211	1.00[JPT][hapmap]
rs7804816	1.00[JPT][hapmap]
rs7806235	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929668	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10226236	ING3	cis	parietal	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117396400-117450200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:117432200-117453000	Weak transcription	Aorta	Aorta
3	chr7:117432800-117451800	Weak transcription	Fetal Stomach	stomach
4	chr7:117437400-117456200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:117444400-117451600	Enhancers	Fetal Heart	heart
6	chr7:117445000-117450800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:117445600-117450200	Weak transcription	Pancreas	Pancrea
8	chr7:117446200-117451000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:117447400-117450000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr7:117447600-117450200	Enhancers	Fetal Brain Male	brain
11	chr7:117447600-117450800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:117447600-117453400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:117447800-117450000	Enhancers	Fetal Lung	lung
14	chr7:117447800-117450200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:117447800-117450400	Enhancers	Duodenum Mucosa	Duodenum
16	chr7:117447800-117451200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr7:117448000-117450400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr7:117448000-117450400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:117448000-117453400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:117448400-117450000	Enhancers	Brain Hippocampus Middle	brain
21	chr7:117448400-117451200	Enhancers	NHLF	lung
22	chr7:117448400-117451400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:117448400-117454200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr7:117448600-117450000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:117448600-117450000	Weak transcription	Osteobl	bone
26	chr7:117448600-117450200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:117448600-117450400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:117448600-117450800	Weak transcription	Left Ventricle	heart
29	chr7:117448600-117451200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr7:117448600-117458400	Weak transcription	Esophagus	oesophagus
31	chr7:117448800-117450200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:117448800-117452200	Weak transcription	Colon Smooth Muscle	Colon
33	chr7:117449000-117450000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:117449000-117450200	Weak transcription	Stomach Mucosa	stomach
35	chr7:117449000-117451400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:117449000-117467200	Weak transcription	Fetal Brain Female	brain
37	chr7:117449200-117450200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:117449200-117450200	Weak transcription	Fetal Kidney	kidney
39	chr7:117449200-117450200	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr7:117449200-117450400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:117449200-117450600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr7:117449200-117450600	Weak transcription	Brain Anterior Caudate	brain
43	chr7:117449200-117451400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr7:117449600-117450000	Genic enhancers	HUES64 Cell Line	embryonic stem cell
45	chr7:117449600-117450200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:117449600-117450400	Enhancers	Liver	Liver
47	chr7:117449600-117451000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:117449600-117451000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:117449600-117451200	Enhancers	Placenta Amnion	Placenta Amnion
50	chr7:117449600-117455800	Weak transcription	Adipose Nuclei	Adipose

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