Variant report

Variant	rs7796211
Chromosome Location	chr7:117327325-117327326
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:117114628-117119361..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
2	7:116307511-116321259..7:117326534-117332210	Hela-S3	cervix:
3	chr7:117314737..117317346-chr7:117324406..117328585,3	MCF-7	breast:
4	7:116957165-116964911..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
5	7:116434729-116454408..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
6	7:115890993-115892266..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
7	7:117100350-117112126..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
8	chr7:117321253..117323639-chr7:117325646..117329002,3	K562	blood:
9	7:116500954-116503335..7:117326534-117332210	Hela-S3	cervix:
10	7:116604327-116608063..7:117326534-117332210	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000105989	Chromatin interaction
ENSG00000228368	Chromatin interaction
ENSG00000105976	Chromatin interaction
ENSG00000198898	Chromatin interaction
ENSG00000135269	Chromatin interaction
ENSG00000001626	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10226907	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10230544	1.00[JPT][hapmap]
rs10231905	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234869	1.00[JPT][hapmap]
rs10242695	1.00[JPT][hapmap]
rs10244694	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10247163	1.00[JPT][hapmap]
rs10249419	0.84[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10254610	1.00[JPT][hapmap]
rs10258815	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs10274022	1.00[JPT][hapmap]
rs10278481	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11767185	0.86[ASN][1000 genomes]
rs11768272	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11974545	0.86[ASN][1000 genomes]
rs12534210	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	1.00[ASN][1000 genomes]
rs1429563	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1429568	0.86[MEX][hapmap]
rs1468262	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17140352	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17452984	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549557	0.86[MEX][hapmap]
rs17550204	0.96[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550567	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1800136	0.84[MEX][hapmap]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.86[ASN][1000 genomes]
rs2079178	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs214163	0.86[ASN][1000 genomes]
rs2189388	1.00[JPT][hapmap]
rs2193258	1.00[JPT][hapmap]
rs34374846	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	1.00[ASN][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs35941557	1.00[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4727855	0.86[MEX][hapmap]
rs4730795	0.86[ASN][1000 genomes]
rs4730797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730798	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730799	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4730801	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730802	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6466618	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466624	1.00[JPT][hapmap]
rs6967118	1.00[JPT][hapmap]
rs6973257	1.00[ASN][1000 genomes]
rs6977789	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6978213	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs739797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs739798	0.84[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs757278	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7779353	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796168	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7804816	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs929668	1.00[JPT][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117322000-117330600	Enhancers	Fetal Intestine Large	intestine
2	chr7:117324000-117328400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:117324000-117328400	Weak transcription	Small Intestine	intestine
4	chr7:117325800-117327600	Enhancers	Fetal Intestine Small	intestine
5	chr7:117327000-117329800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:117327000-117335000	Weak transcription	Dnd41	blood
7	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links