Variant report

Variant	rs6978213
Chromosome Location	chr7:117395995-117395996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	7:116651084-116657331..7:117390750-117397080	Hela-S3	cervix:
2	7:116849860-116864942..7:117390750-117397080	Hela-S3	cervix:
3	7:116604327-116608063..7:117390750-117397080	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000228368	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10226907	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs10230544	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10231905	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs10234869	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10242695	1.00[JPT][hapmap]
rs10247163	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10249419	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs10249988	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10254610	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258815	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274022	1.00[JPT][hapmap]
rs10278481	1.00[JPT][hapmap]
rs11768272	1.00[JPT][hapmap]
rs1468262	1.00[JPT][hapmap]
rs17140352	1.00[JPT][hapmap]
rs17550204	1.00[JPT][hapmap]
rs17550567	1.00[JPT][hapmap]
rs2079178	1.00[JPT][hapmap]
rs2189388	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193258	1.00[JPT][hapmap]
rs4730797	1.00[JPT][hapmap]
rs4730798	1.00[JPT][hapmap]
rs4730799	1.00[JPT][hapmap]
rs4730801	1.00[JPT][hapmap]
rs4730802	1.00[JPT][hapmap]
rs4730803	0.83[ASN][1000 genomes]
rs6466624	1.00[JPT][hapmap]
rs6960332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967118	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6977789	1.00[JPT][hapmap]
rs739797	1.00[JPT][hapmap]
rs739798	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs7779353	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs7784537	0.83[YRI][hapmap]
rs7796168	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs7796211	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs7804816	1.00[JPT][hapmap]
rs929668	1.00[JPT][hapmap]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:117358400-117398800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:117359200-117402600	Weak transcription	Spleen	Spleen
5	chr7:117363200-117401000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:117365600-117407000	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:117371800-117396000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:117375000-117410800	Weak transcription	Left Ventricle	heart
9	chr7:117375200-117431600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:117375400-117396000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:117375400-117402600	Weak transcription	Esophagus	oesophagus
12	chr7:117375800-117406800	Weak transcription	Fetal Kidney	kidney
13	chr7:117379600-117404000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:117385000-117396000	Weak transcription	Ovary	ovary
15	chr7:117385400-117410600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:117386800-117397600	Weak transcription	Fetal Brain Male	brain
17	chr7:117387400-117410400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr7:117391200-117413400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr7:117391800-117398600	Weak transcription	Fetal Intestine Large	intestine
20	chr7:117393400-117400800	Strong transcription	Fetal Brain Female	brain
21	chr7:117393600-117396200	Enhancers	Brain Substantia Nigra	brain
22	chr7:117393600-117401000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:117393800-117396400	Enhancers	Brain Cingulate Gyrus	brain
24	chr7:117394000-117401200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr7:117394200-117402000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:117394400-117397800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:117394600-117398600	Strong transcription	Brain Germinal Matrix	brain
28	chr7:117394600-117402200	Weak transcription	Fetal Heart	heart
29	chr7:117394600-117402400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr7:117394800-117396000	Genic enhancers	Brain Anterior Caudate	brain
31	chr7:117394800-117396400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:117394800-117397000	Genic enhancers	Brain Angular Gyrus	brain
33	chr7:117394800-117402600	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:117394800-117403000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr7:117395000-117396800	Strong transcription	Adipose Nuclei	Adipose
36	chr7:117395000-117397000	Genic enhancers	Brain Inferior Temporal Lobe	brain
37	chr7:117395000-117398600	Strong transcription	Fetal Stomach	stomach
38	chr7:117395000-117400600	Strong transcription	Fetal Lung	lung
39	chr7:117395000-117401800	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr7:117395200-117398200	Strong transcription	NHLF	lung
41	chr7:117395200-117400800	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:117395800-117396000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:117395800-117396200	Genic enhancers	Brain Hippocampus Middle	brain
44	chr7:117395800-117396200	Genic enhancers	Pancreas	Pancrea
45	chr7:117395800-117396600	Strong transcription	Aorta	Aorta
46	chr7:117395800-117396800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:117395800-117397000	Strong transcription	Fetal Intestine Small	intestine
48	chr7:117395800-117397200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:117395800-117397200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr7:117395800-117397200	Strong transcription	H9 Cell Line	embryonic stem cell

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