Variant report

Variant	rs6977789
Chromosome Location	chr7:117342771-117342772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:117065049-117068137..7:117341506-117356953	H1-hESC	embryonic stem cell:	embryo
2	7:116651084-116657331..7:117341506-117356953	Hela-S3	cervix:
3	7:117251668-117255413..7:117341506-117356953	Hela-S3	cervix:
4	7:116754962-116765597..7:117341506-117356953	Hela-S3	cervix:
5	chr7:117342771..117345481-chr7:117345795..117348003,2	K562	blood:
6	7:116728195-116740907..7:117341506-117356953	Hela-S3	cervix:
7	7:116434729-116454408..7:117341506-117356953	Hela-S3	cervix:
8	7:117114628-117119361..7:117341506-117356953	H1-hESC	embryonic stem cell:	embryo
9	chr7:117340357..117343008-chr7:117343379..117345686,2	K562	blood:
10	7:117100350-117112126..7:117341506-117356953	GM12878	blood:
11	7:115847372-115857098..7:117341506-117356953	Hela-S3	cervix:
12	7:115890993-115892266..7:117341506-117356953	H1-hESC	embryonic stem cell:	embryo
13	7:116307511-116321259..7:117341506-117356953	Hela-S3	cervix:
14	7:116604327-116608063..7:117341506-117356953	H1-hESC	embryonic stem cell:	embryo
15	7:115861595-115870968..7:117341506-117356953	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000105976	Chromatin interaction
ENSG00000198898	Chromatin interaction
ENSG00000004866	Chromatin interaction
ENSG00000135269	Chromatin interaction
ENSG00000226367	Chromatin interaction
ENSG00000228368	Chromatin interaction
ENSG00000154438	Chromatin interaction
ENSG00000001626	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10226907	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10230544	1.00[JPT][hapmap]
rs10231905	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10234869	1.00[JPT][hapmap]
rs10242695	1.00[JPT][hapmap]
rs10244694	0.86[ASN][1000 genomes]
rs10247163	1.00[JPT][hapmap]
rs10249419	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10254610	1.00[JPT][hapmap]
rs10258815	1.00[JPT][hapmap]
rs10266116	0.86[ASN][1000 genomes]
rs10272233	0.86[ASN][1000 genomes]
rs10274022	1.00[JPT][hapmap]
rs10278481	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1042180	0.86[ASN][1000 genomes]
rs10441245	0.86[ASN][1000 genomes]
rs10953848	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764070	0.86[ASN][1000 genomes]
rs11767185	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768272	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.83[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974545	0.80[GIH][hapmap];1.00[ASN][1000 genomes]
rs12534210	1.00[ASN][1000 genomes]
rs12534233	1.00[ASN][1000 genomes]
rs1366912	0.86[ASN][1000 genomes]
rs1429563	0.86[ASN][1000 genomes]
rs1429568	0.84[GIH][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs1468262	0.94[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1594189	0.86[ASN][1000 genomes]
rs17140297	0.86[ASN][1000 genomes]
rs17140352	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17452984	0.86[ASN][1000 genomes]
rs17549557	0.84[GIH][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs17550204	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17550567	1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800136	0.84[GIH][hapmap];0.91[MEX][hapmap];0.86[ASN][1000 genomes]
rs1966352	1.00[ASN][1000 genomes]
rs2059938	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2079178	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs213980	0.83[ASN][1000 genomes]
rs213981	0.83[ASN][1000 genomes]
rs213986	0.80[GIH][hapmap]
rs213988	0.83[ASN][1000 genomes]
rs213989	0.83[ASN][1000 genomes]
rs214159	0.86[ASN][1000 genomes]
rs214163	1.00[ASN][1000 genomes]
rs214164	0.83[ASN][1000 genomes]
rs2188150	0.83[ASN][1000 genomes]
rs2189388	1.00[JPT][hapmap]
rs2193258	1.00[JPT][hapmap]
rs34331324	0.86[ASN][1000 genomes]
rs34374846	0.86[ASN][1000 genomes]
rs34541842	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34637736	1.00[ASN][1000 genomes]
rs34665848	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34927137	0.86[ASN][1000 genomes]
rs35216437	1.00[ASN][1000 genomes]
rs35292549	0.86[ASN][1000 genomes]
rs35454880	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35871198	1.00[ASN][1000 genomes]
rs35941557	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4500028	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727855	0.84[GIH][hapmap];0.84[MEX][hapmap]
rs4730793	0.86[ASN][1000 genomes]
rs4730794	0.86[ASN][1000 genomes]
rs4730795	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730797	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730798	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730799	0.95[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730801	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4730802	0.87[CEU][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466618	0.86[ASN][1000 genomes]
rs6466624	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs6943317	0.86[ASN][1000 genomes]
rs6967118	1.00[JPT][hapmap]
rs6967714	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6973257	0.91[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6978213	1.00[JPT][hapmap]
rs6980032	0.86[ASN][1000 genomes]
rs739797	1.00[JPT][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes]
rs739798	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs757278	1.00[ASN][1000 genomes]
rs7779353	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7796168	1.00[JPT][hapmap]
rs7796211	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7804816	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929668	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464695	chr7:117342771-117393516	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv608258	chr7:117342771-117393516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117338800-117343200	Weak transcription	Hela-S3	cervix

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