Variant report

Variant	rs17452984
Chromosome Location	chr7:117324588-117324589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117314737..117317346-chr7:117324406..117328585,3	MCF-7	breast:
2	chr7:117314542..117317864-chr7:117323534..117325952,3	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10226907	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10230544	1.00[JPT][hapmap]
rs10231905	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234869	1.00[JPT][hapmap]
rs10242695	1.00[JPT][hapmap]
rs10244694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10247163	1.00[JPT][hapmap]
rs10249419	0.84[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10254610	1.00[JPT][hapmap]
rs10258815	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs10274022	1.00[JPT][hapmap]
rs10278481	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11767185	0.86[ASN][1000 genomes]
rs11768272	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11974545	0.86[ASN][1000 genomes]
rs12534210	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	1.00[ASN][1000 genomes]
rs1429563	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468262	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17140352	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17550204	0.96[CEU][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550567	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.86[ASN][1000 genomes]
rs2079178	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs214163	0.86[ASN][1000 genomes]
rs2189388	1.00[JPT][hapmap]
rs2193258	1.00[JPT][hapmap]
rs34374846	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	1.00[ASN][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs35941557	1.00[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4730795	0.86[ASN][1000 genomes]
rs4730797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730798	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730799	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4730801	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730802	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6466618	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466624	1.00[JPT][hapmap]
rs6967118	1.00[JPT][hapmap]
rs6973257	1.00[ASN][1000 genomes]
rs6977789	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6978213	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs739797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs739798	0.84[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs757278	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7779353	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796168	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7796211	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804816	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs929668	1.00[JPT][hapmap]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117315000-117326000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:117317200-117326000	Weak transcription	Dnd41	blood
3	chr7:117322000-117324800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr7:117322000-117330600	Enhancers	Fetal Intestine Large	intestine
5	chr7:117322400-117324800	Enhancers	Fetal Intestine Small	intestine
6	chr7:117322800-117324600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:117323000-117324800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:117323400-117324600	Enhancers	Colonic Mucosa	Colon
9	chr7:117323600-117326200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:117323800-117325000	Enhancers	Hela-S3	cervix
11	chr7:117323800-117326000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:117324000-117324600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:117324000-117326000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:117324000-117326000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:117324000-117328400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:117324000-117328400	Weak transcription	Small Intestine	intestine
17	chr7:117324200-117326200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:117324200-117326400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:117324200-117326600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:117324400-117326600	Weak transcription	Rectal Mucosa Donor 29	rectum

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