Variant report

Variant	rs10226907
Chromosome Location	chr7:117328370-117328371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:117328265-117328551	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr7:117328207-117328612	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr7:117328266-117328615	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr7:117328209-117328503	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr7:117328230-117328549	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr7:117328217-117328635	MCF10A-Er-Src	breast:	n/a	n/a
7	MYC	chr7:117328349-117328589	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr7:117328242-117328615	MCF10A-Er-Src	breast:	n/a	n/a
9	ATF1	chr7:117328271-117328471	K562	blood:	n/a	n/a
10	MYC	chr7:117328332-117328614	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:117114628-117119361..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
2	7:116307511-116321259..7:117326534-117332210	Hela-S3	cervix:
3	chr7:117314737..117317346-chr7:117324406..117328585,3	MCF-7	breast:
4	7:116957165-116964911..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
5	7:116434729-116454408..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
6	7:115890993-115892266..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
7	7:117100350-117112126..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
8	chr7:117321253..117323639-chr7:117325646..117329002,3	K562	blood:
9	7:116500954-116503335..7:117326534-117332210	Hela-S3	cervix:
10	7:116604327-116608063..7:117326534-117332210	Hela-S3	cervix:

No data

Variant related genes	Relation type
CFTR	TF binding region
ENSG00000105976	Chromatin interaction
ENSG00000228368	Chromatin interaction
ENSG00000105989	Chromatin interaction
ENSG00000135269	Chromatin interaction
ENSG00000198898	Chromatin interaction
ENSG00000001626	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10230544	1.00[JPT][hapmap]
rs10231905	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234869	1.00[JPT][hapmap]
rs10242695	1.00[JPT][hapmap]
rs10244694	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10247163	1.00[JPT][hapmap]
rs10249419	0.88[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10254610	1.00[JPT][hapmap]
rs10258815	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10274022	1.00[JPT][hapmap]
rs10278481	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11767185	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11768272	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11974545	0.86[ASN][1000 genomes]
rs12534210	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	1.00[ASN][1000 genomes]
rs1429563	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468262	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17140352	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17452984	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550204	0.96[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550567	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.86[ASN][1000 genomes]
rs2079178	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs214163	0.86[ASN][1000 genomes]
rs2189388	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs2193258	1.00[JPT][hapmap]
rs34374846	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	1.00[ASN][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs35941557	1.00[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4730795	0.86[ASN][1000 genomes]
rs4730797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730798	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730799	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4730801	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730802	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6466618	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466624	1.00[JPT][hapmap]
rs6967118	1.00[JPT][hapmap]
rs6973257	1.00[ASN][1000 genomes]
rs6977789	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6978213	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs739797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs739798	0.88[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs757278	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7779353	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796168	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7796211	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804816	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs929668	1.00[JPT][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117322000-117330600	Enhancers	Fetal Intestine Large	intestine
2	chr7:117324000-117328400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:117324000-117328400	Weak transcription	Small Intestine	intestine
4	chr7:117327000-117329800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:117327000-117335000	Weak transcription	Dnd41	blood
6	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:117327600-117328600	Weak transcription	Fetal Intestine Small	intestine
8	chr7:117327800-117329000	Enhancers	NHEK	skin
9	chr7:117328200-117329000	Enhancers	HMEC	breast

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