Variant report

Variant	rs213988
Chromosome Location	chr7:117262304-117262305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117259386..117261443-chr7:117261641..117263539,2	MCF-7	breast:
2	chr7:117260850..117264007-chr7:117264071..117265612,3	K562	blood:
3	chr7:117256748..117259660-chr7:117262256..117265219,3	K562	blood:
4	chr7:117255614..117259660-chr7:117261825..117265320,4	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10249419	0.83[ASN][1000 genomes]
rs10266116	1.00[JPT][hapmap]
rs10276533	0.94[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10278481	0.83[ASN][1000 genomes]
rs1042180	1.00[JPT][hapmap];0.84[TSI][hapmap]
rs10953848	0.83[ASN][1000 genomes]
rs11767185	0.83[ASN][1000 genomes]
rs11768272	0.83[ASN][1000 genomes]
rs11974545	1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12534210	0.83[ASN][1000 genomes]
rs12534233	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1429568	0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs17140297	1.00[JPT][hapmap];0.82[TSI][hapmap]
rs17140352	0.83[ASN][1000 genomes]
rs17549557	0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs17550567	0.83[ASN][1000 genomes]
rs1800136	0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs1966352	0.83[ASN][1000 genomes]
rs2059938	0.83[ASN][1000 genomes]
rs2079178	0.83[ASN][1000 genomes]
rs213979	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs213980	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213981	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213986	0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.83[ASN][1000 genomes]
rs213989	0.86[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214163	0.87[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs214164	0.95[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188150	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2213958	1.00[JPT][hapmap]
rs2518879	0.94[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34541842	0.83[ASN][1000 genomes]
rs34637736	0.83[ASN][1000 genomes]
rs34665848	0.83[ASN][1000 genomes]
rs35050470	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35216437	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35244428	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35454880	0.83[ASN][1000 genomes]
rs35871198	0.83[ASN][1000 genomes]
rs4500028	0.83[ASN][1000 genomes]
rs4727855	0.83[GIH][hapmap];0.96[TSI][hapmap]
rs4730795	0.83[ASN][1000 genomes]
rs4730797	0.83[ASN][1000 genomes]
rs4730798	0.83[ASN][1000 genomes]
rs4730801	0.83[ASN][1000 genomes]
rs4730802	0.83[ASN][1000 genomes]
rs6977789	0.83[ASN][1000 genomes]
rs6980032	1.00[JPT][hapmap];0.95[TSI][hapmap]
rs739797	0.83[ASN][1000 genomes]
rs739798	0.83[ASN][1000 genomes]
rs757278	0.83[ASN][1000 genomes]
rs7804816	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs213988	CTTNBP2	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117253000-117267200	Weak transcription	Dnd41	blood
3	chr7:117257000-117263600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:117257600-117270000	Weak transcription	Stomach Mucosa	stomach
5	chr7:117258000-117268600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:117258200-117286600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr7:117260000-117264000	Weak transcription	Fetal Intestine Large	intestine
8	chr7:117261200-117270600	Weak transcription	Fetal Intestine Small	intestine

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