Variant report

Variant	rs35244428
Chromosome Location	chr7:117277926-117277927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10276533	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11974545	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12534233	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs213979	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs213980	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs213981	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs213988	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs213989	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs214163	0.95[EUR][1000 genomes]
rs214164	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2188150	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2518879	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35050470	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35216437	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384260	chr7:117277612-117278579	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117258200-117286600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:117269400-117283000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:117270800-117285600	Weak transcription	Stomach Mucosa	stomach
5	chr7:117271600-117285600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:117271800-117281600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:117271800-117285600	Weak transcription	Fetal Intestine Large	intestine
8	chr7:117272600-117286600	Weak transcription	Fetal Intestine Small	intestine
9	chr7:117274600-117287400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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