Variant report

Variant	rs214164
Chromosome Location	chr7:117292696-117292697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10249419	0.83[ASN][1000 genomes]
rs10266116	1.00[JPT][hapmap]
rs10276533	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10278481	0.83[ASN][1000 genomes]
rs1042180	1.00[JPT][hapmap]
rs10953848	0.83[ASN][1000 genomes]
rs11767185	0.83[ASN][1000 genomes]
rs11768272	0.83[ASN][1000 genomes]
rs11974545	0.95[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12534210	0.83[ASN][1000 genomes]
rs12534233	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1429568	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs17140297	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs17140352	0.83[ASN][1000 genomes]
rs17549557	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs17550567	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs1800136	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs1966352	0.83[ASN][1000 genomes]
rs2059938	0.83[ASN][1000 genomes]
rs2079178	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs213979	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs213980	0.95[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213981	0.95[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213986	0.81[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs213988	0.95[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213989	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214163	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2188150	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2213958	1.00[JPT][hapmap]
rs2518879	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34541842	0.83[ASN][1000 genomes]
rs34637736	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34665848	0.83[ASN][1000 genomes]
rs35050470	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35216437	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35244428	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35454880	0.83[ASN][1000 genomes]
rs35871198	0.83[ASN][1000 genomes]
rs4500028	0.83[ASN][1000 genomes]
rs4727855	0.81[CEU][hapmap]
rs4730795	0.83[ASN][1000 genomes]
rs4730797	0.83[ASN][1000 genomes]
rs4730798	0.83[ASN][1000 genomes]
rs4730801	0.83[ASN][1000 genomes]
rs4730802	0.83[ASN][1000 genomes]
rs6977789	0.83[ASN][1000 genomes]
rs6980032	1.00[JPT][hapmap]
rs739797	0.81[CEU][hapmap];0.83[ASN][1000 genomes]
rs739798	0.83[ASN][1000 genomes]
rs757278	0.83[ASN][1000 genomes]
rs7804816	0.83[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:117286800-117293000	Weak transcription	Fetal Intestine Large	intestine
4	chr7:117286800-117294600	Weak transcription	Hela-S3	cervix
5	chr7:117287600-117293000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:117288000-117293200	Weak transcription	Fetal Intestine Small	intestine
7	chr7:117288800-117297400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:117289000-117293000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr7:117291600-117294600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:117291800-117293000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:117292000-117301200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:117292200-117294000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:117292200-117294000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:117292200-117294200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:117292200-117294200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:117292600-117293400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:117292600-117298400	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links