Variant report

Variant	rs10266116
Chromosome Location	chr7:117304459-117304460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117301157..117302902-chr7:117304073..117306699,2	K562	blood:
2	chr7:117255020..117257143-chr7:117304303..117306209,2	MCF-7	breast:
3	chr7:117303758..117306592-chr7:117317901..117319911,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10249419	0.86[ASN][1000 genomes]
rs10272233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276533	1.00[JPT][hapmap]
rs10278481	0.86[ASN][1000 genomes]
rs1042180	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10441245	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11764070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767185	0.86[ASN][1000 genomes]
rs11768272	0.82[CEU][hapmap];0.86[ASN][1000 genomes]
rs11974545	0.86[ASN][1000 genomes]
rs12534210	0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1429568	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468262	0.81[CEU][hapmap]
rs1594189	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140297	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140352	0.84[CEU][hapmap];0.86[ASN][1000 genomes]
rs17549557	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550567	0.86[ASN][1000 genomes]
rs1800136	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2079178	0.86[ASN][1000 genomes]
rs213980	1.00[JPT][hapmap]
rs213981	1.00[JPT][hapmap]
rs213986	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs213988	1.00[JPT][hapmap]
rs213989	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs214159	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214163	0.81[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs214164	1.00[JPT][hapmap]
rs2188150	1.00[JPT][hapmap]
rs2213958	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs2518879	1.00[JPT][hapmap]
rs34331324	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs34927137	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4727855	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4730793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730794	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730795	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730797	0.86[ASN][1000 genomes]
rs4730798	0.84[CEU][hapmap];0.86[ASN][1000 genomes]
rs4730799	0.82[CEU][hapmap]
rs4730801	0.86[ASN][1000 genomes]
rs4730802	0.86[ASN][1000 genomes]
rs6943317	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977789	0.86[ASN][1000 genomes]
rs6980032	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739797	0.86[ASN][1000 genomes]
rs739798	0.86[ASN][1000 genomes]
rs757278	0.86[ASN][1000 genomes]
rs7804816	0.82[CEU][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117286000-117310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117294800-117309800	Weak transcription	Pancreas	Pancrea
3	chr7:117296600-117306400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:117300400-117305800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:117300600-117304600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:117301000-117304600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:117301600-117304600	Weak transcription	Fetal Heart	heart
8	chr7:117301800-117311800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:117302000-117306000	Weak transcription	Fetal Intestine Large	intestine
10	chr7:117302000-117306600	Weak transcription	Fetal Intestine Small	intestine
11	chr7:117302400-117311400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:117303800-117305000	Weak transcription	HUVEC	blood vessel
13	chr7:117304200-117308200	Strong transcription	Duodenum Mucosa	Duodenum
14	chr7:117304400-117304600	Enhancers	A549	lung
15	chr7:117304400-117305000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:117304400-117307800	Enhancers	Hela-S3	cervix
17	chr7:117304400-117308000	Enhancers	Dnd41	blood
18	chr7:117304400-117308200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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