Variant report

Variant	rs214159
Chromosome Location	chr7:117314406-117314407
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117259654..117260333-chr7:117313702..117314524,2	MCF-7	breast:
2	chr7:117257272..117259077-chr7:117312247..117314442,2	MCF-7	breast:
3	chr7:117308138..117311629-chr7:117312851..117315783,3	MCF-7	breast:
4	chr7:117305228..117309345-chr7:117311751..117315274,4	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10226236	1.00[JPT][hapmap]
rs10226907	1.00[JPT][hapmap]
rs10230544	1.00[JPT][hapmap]
rs10231905	1.00[JPT][hapmap]
rs10234869	1.00[JPT][hapmap]
rs10242695	1.00[JPT][hapmap]
rs10247163	1.00[JPT][hapmap]
rs10249419	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10254610	1.00[JPT][hapmap]
rs10258815	1.00[JPT][hapmap]
rs10266116	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272233	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274022	1.00[JPT][hapmap]
rs10278481	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1042180	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10441245	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953848	0.86[ASN][1000 genomes]
rs11764070	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767185	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11768272	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11974545	0.86[ASN][1000 genomes]
rs12534210	0.86[ASN][1000 genomes]
rs12534233	0.86[ASN][1000 genomes]
rs1366912	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1429568	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468262	1.00[JPT][hapmap]
rs1594189	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140297	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140352	0.80[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17549557	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550204	1.00[JPT][hapmap]
rs17550567	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1800136	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966352	0.86[ASN][1000 genomes]
rs2059938	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2079178	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs213986	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs214163	0.86[ASN][1000 genomes]
rs2189388	1.00[JPT][hapmap]
rs2193258	1.00[JPT][hapmap]
rs2213958	0.89[YRI][hapmap];0.90[EUR][1000 genomes]
rs34331324	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541842	0.86[ASN][1000 genomes]
rs34637736	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34665848	0.86[ASN][1000 genomes]
rs34927137	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35216437	0.86[ASN][1000 genomes]
rs35292549	0.99[EUR][1000 genomes]
rs35454880	0.86[ASN][1000 genomes]
rs35871198	0.86[ASN][1000 genomes]
rs4500028	0.86[ASN][1000 genomes]
rs4727855	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4730793	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730794	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730795	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730798	0.80[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730799	1.00[JPT][hapmap]
rs4730801	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4730802	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6466624	1.00[JPT][hapmap]
rs6943317	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967118	1.00[JPT][hapmap]
rs6977789	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6978213	1.00[JPT][hapmap]
rs6980032	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739797	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs739798	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs757278	0.86[ASN][1000 genomes]
rs7779353	1.00[JPT][hapmap]
rs7796168	1.00[JPT][hapmap]
rs7796211	1.00[JPT][hapmap]
rs7804816	0.84[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs929668	1.00[JPT][hapmap]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117306200-117315600	Weak transcription	Fetal Lung	lung
2	chr7:117310600-117314600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:117312400-117317200	Enhancers	Fetal Intestine Large	intestine
4	chr7:117312800-117314800	Enhancers	Liver	Liver
5	chr7:117312800-117317400	Enhancers	Fetal Intestine Small	intestine
6	chr7:117313000-117316400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:117313200-117314600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:117313200-117315400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:117313200-117316600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:117313200-117317000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:117313400-117315000	Enhancers	Stomach Mucosa	stomach
12	chr7:117313400-117315000	Enhancers	Dnd41	blood
13	chr7:117313600-117315400	Weak transcription	NHLF	lung
14	chr7:117313600-117315800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:117313800-117315600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:117313800-117315800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:117313800-117316000	Weak transcription	Pancreas	Pancrea
18	chr7:117313800-117316200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:117313800-117316200	Weak transcription	Right Atrium	heart
20	chr7:117314000-117314600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:117314000-117314600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr7:117314000-117314800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:117314000-117315000	Enhancers	Brain Cingulate Gyrus	brain
24	chr7:117314000-117315000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr7:117314000-117315000	Enhancers	Brain Substantia Nigra	brain
26	chr7:117314000-117315400	Weak transcription	Hela-S3	cervix
27	chr7:117314000-117315600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:117314000-117315600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:117314000-117315600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:117314000-117315800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr7:117314000-117315800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:117314000-117315800	Weak transcription	Adipose Nuclei	Adipose
33	chr7:117314000-117315800	Weak transcription	Colonic Mucosa	Colon
34	chr7:117314000-117316000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr7:117314000-117316000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr7:117314000-117316400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr7:117314000-117317200	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr7:117314200-117314600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:117314200-117315000	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr7:117314200-117315000	Enhancers	Brain Hippocampus Middle	brain
41	chr7:117314200-117315000	Weak transcription	A549	lung
42	chr7:117314200-117317400	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr7:117314400-117314800	Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr7:117314400-117314800	Enhancers	Brain Anterior Caudate	brain
45	chr7:117314400-117315000	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr7:117314400-117315000	Enhancers	Fetal Thymus	thymus
47	chr7:117314400-117315600	Weak transcription	Brain Angular Gyrus	brain
48	chr7:117314400-117315800	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links