Variant report

Variant	rs35915869
Chromosome Location	chr7:117152409-117152410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:116957165-116964911..7:117151441-117153264	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000105989	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1029397	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978434	1.00[ASN][1000 genomes]
rs17139830	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139881	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34180375	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34442917	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34624661	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652497	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34849722	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34979995	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35071293	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35091062	0.85[EUR][1000 genomes]
rs35604119	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35783977	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36046385	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36143281	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4571678	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55728161	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55901305	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58707615	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61711770	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972819	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73714649	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73714651	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117143200-117152600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:117150400-117153800	Strong transcription	Duodenum Mucosa	Duodenum
3	chr7:117151000-117154400	Strong transcription	Fetal Intestine Large	intestine
4	chr7:117151000-117154400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr7:117151200-117154400	Strong transcription	Rectal Mucosa Donor 31	rectum
6	chr7:117151800-117172600	Weak transcription	Pancreas	Pancrea
7	chr7:117152200-117152800	Strong transcription	Fetal Intestine Small	intestine

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