Variant report

Variant	rs34624661
Chromosome Location	chr7:117139240-117139241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115847372-115857098..7:117137230-117139328	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1029397	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978434	1.00[ASN][1000 genomes]
rs17139830	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34180375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34442917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652497	1.00[ASN][1000 genomes]
rs34849722	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34979995	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35071293	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35091062	0.93[EUR][1000 genomes]
rs35604119	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35783977	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35915869	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36046385	1.00[ASN][1000 genomes]
rs36143281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4571678	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55728161	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55901305	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58707615	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61711770	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73714649	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73714651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117126800-117151200	Weak transcription	Pancreas	Pancrea
2	chr7:117129800-117144600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:117131200-117139600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:117135200-117142200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:117135800-117141200	Weak transcription	Small Intestine	intestine
6	chr7:117136200-117139400	Weak transcription	Fetal Intestine Small	intestine
7	chr7:117136400-117141000	Weak transcription	Fetal Intestine Large	intestine

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