Variant report

Variant	rs36143281
Chromosome Location	chr7:117107880-117107881
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:117100350-117112126..7:117341506-117356953	GM12878	blood:
2	7:117100350-117112126..7:117326534-117332210	H1-hESC	embryonic stem cell:	embryo
3	chr7:117104003..117105713-chr7:117107226..117109637,2	MCF-7	breast:
4	7:116580605-116585719..7:117100350-117112126	H1-hESC	embryonic stem cell:	embryo
5	chr7:117107707..117110294-chr7:117111075..117113526,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222150	Chromatin interaction
ENSG00000001626	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1029397	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978434	1.00[ASN][1000 genomes]
rs17139830	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34180375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34442917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34624661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652497	1.00[ASN][1000 genomes]
rs34849722	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34979995	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35071293	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35091062	0.93[EUR][1000 genomes]
rs35604119	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35783977	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35915869	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36046385	1.00[ASN][1000 genomes]
rs4571678	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55728161	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55901305	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58707615	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61711770	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73714649	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73714651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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