Variant report

Variant	rs17140304
Chromosome Location	chr5:116018376-116018377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10058902	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10067202	0.92[EUR][1000 genomes]
rs10478304	0.92[EUR][1000 genomes]
rs11953307	0.92[EUR][1000 genomes]
rs11956773	0.92[EUR][1000 genomes]
rs17140334	0.92[EUR][1000 genomes]
rs17363522	0.84[EUR][1000 genomes]
rs28498943	0.92[EUR][1000 genomes]
rs58883622	0.92[EUR][1000 genomes]
rs59529534	0.92[EUR][1000 genomes]
rs61151549	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73263308	0.92[EUR][1000 genomes]
rs7702584	0.92[EUR][1000 genomes]
rs7705654	0.92[EUR][1000 genomes]
rs7709483	0.92[EUR][1000 genomes]
rs7720391	0.85[EUR][1000 genomes]
rs7737847	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9687139	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1030056	chr5:116008971-116278725	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116013000-116019600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:116016000-116032000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:116017200-116018600	Weak transcription	Pancreas	Pancrea
4	chr5:116017800-116018800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:116017800-116019400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:116018000-116018800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:116018000-116019400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:116018000-116019400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:116018000-116020000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:116018000-116020600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:116018200-116019400	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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