Variant report

Variant	rs7737847
Chromosome Location	chr5:116040808-116040809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEMA6A-6	chr5:116040765-116040866	NONHSAT103376
2	lnc-SEMA6A-6	chr5:116040765-116040866	FPKM1_group_26180_transcript_1

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10058902	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10067202	1.00[EUR][1000 genomes]
rs10478304	1.00[EUR][1000 genomes]
rs11953307	1.00[EUR][1000 genomes]
rs11956773	1.00[EUR][1000 genomes]
rs13354807	0.83[EUR][1000 genomes]
rs17140266	0.84[EUR][1000 genomes]
rs17140304	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17140334	1.00[EUR][1000 genomes]
rs17363522	0.92[EUR][1000 genomes]
rs28498943	1.00[EUR][1000 genomes]
rs58883622	1.00[EUR][1000 genomes]
rs59529534	1.00[EUR][1000 genomes]
rs61151549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61518662	0.84[EUR][1000 genomes]
rs6594980	0.85[EUR][1000 genomes]
rs73263308	1.00[EUR][1000 genomes]
rs7702584	1.00[EUR][1000 genomes]
rs7705654	1.00[EUR][1000 genomes]
rs7709483	1.00[EUR][1000 genomes]
rs7720391	0.92[EUR][1000 genomes]
rs9687139	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1030056	chr5:116008971-116278725	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1033140	chr5:116035131-116314673	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116038200-116041400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr5:116038200-116041400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr5:116038200-116042200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr5:116038400-116041000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:116038400-116042000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:116038600-116041000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:116039200-116041200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:116039200-116041800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:116040400-116041800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:116040800-116045400	Enhancers	GM12878-XiMat	blood

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