Variant report

Variant	rs61518662
Chromosome Location	chr5:115986896-115986897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115981549..115984671-chr5:115985029..115987618,3	K562	blood:
2	chr5:115985452..115987393-chr5:115988593..115990486,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10058902	0.84[EUR][1000 genomes]
rs10067202	0.84[EUR][1000 genomes]
rs10478304	0.84[EUR][1000 genomes]
rs11953307	0.84[EUR][1000 genomes]
rs11956773	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17140266	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140334	0.84[EUR][1000 genomes]
rs17363522	0.92[EUR][1000 genomes]
rs28498943	0.84[EUR][1000 genomes]
rs58883622	0.84[EUR][1000 genomes]
rs59529534	0.84[EUR][1000 genomes]
rs61151549	0.84[EUR][1000 genomes]
rs73263308	0.84[EUR][1000 genomes]
rs7702584	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7705654	0.84[EUR][1000 genomes]
rs7709483	0.84[EUR][1000 genomes]
rs7737847	0.84[EUR][1000 genomes]
rs9687139	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3387336	chr5:115986601-115986914	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115965000-115987200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:115976400-115987000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:115981800-115987000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:115981800-115987200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:115982400-115987200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:115983800-115987200	Weak transcription	HepG2	liver
7	chr5:115984000-115987000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:115984000-115987200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:115985600-115987600	Enhancers	Brain Anterior Caudate	brain
10	chr5:115985600-115988000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:115985600-115991600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:115985800-115989800	Enhancers	Fetal Brain Male	brain
13	chr5:115986000-115988000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:115986200-115987600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:115986200-115987600	Enhancers	Brain Hippocampus Middle	brain
16	chr5:115986200-115987800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr5:115986200-115987800	Enhancers	Brain Cingulate Gyrus	brain
18	chr5:115986200-115987800	Enhancers	Brain Substantia Nigra	brain
19	chr5:115986400-115987600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr5:115986400-115987600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:115986400-115987600	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr5:115986400-115988000	Enhancers	GM12878-XiMat	blood
23	chr5:115986600-115987400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:115986800-115987600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr5:115986800-115987600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr5:115986800-115988000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr5:115986800-115988000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr5:115986800-115988000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr5:115986800-115988000	Enhancers	Brain Angular Gyrus	brain

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