Variant report

Variant	rs17140892
Chromosome Location	chr7:69246604-69246605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69211697..69213251-chr7:69245459..69247066,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17140786	1.00[AFR][1000 genomes]
rs17140841	1.00[AFR][1000 genomes]
rs17140913	1.00[AFR][1000 genomes]
rs17141018	1.00[AFR][1000 genomes]
rs35565055	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69240800-69247000	Weak transcription	Left Ventricle	heart
2	chr7:69244800-69247200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:69245000-69246800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:69245000-69246800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:69245000-69247000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:69245000-69247400	Enhancers	Placenta	Placenta
7	chr7:69245200-69246800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:69245200-69247000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:69245400-69246800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:69245400-69246800	Enhancers	Brain Angular Gyrus	brain
11	chr7:69245400-69247000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr7:69245400-69247000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:69245400-69249600	Enhancers	Right Atrium	heart
14	chr7:69245400-69250000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:69245400-69250800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:69245600-69247000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:69245600-69247000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:69245600-69247000	Enhancers	GM12878-XiMat	blood
19	chr7:69245600-69247000	Enhancers	NH-A	brain
20	chr7:69245600-69249600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr7:69245600-69249600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr7:69245600-69249800	Enhancers	Brain Substantia Nigra	brain
23	chr7:69245600-69250800	Enhancers	Brain Germinal Matrix	brain
24	chr7:69245800-69247000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:69245800-69247000	Enhancers	Brain Cingulate Gyrus	brain
26	chr7:69245800-69247000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr7:69245800-69248000	Weak transcription	NHEK	skin
28	chr7:69245800-69249200	Enhancers	NHDF-Ad	bronchial
29	chr7:69246000-69247800	Weak transcription	Fetal Heart	heart
30	chr7:69246000-69248000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr7:69246000-69248200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:69246000-69249600	Enhancers	Rectal Smooth Muscle	rectum
33	chr7:69246000-69249800	Enhancers	Fetal Stomach	stomach
34	chr7:69246000-69250000	Enhancers	Fetal Muscle Leg	muscle
35	chr7:69246000-69250800	Enhancers	Adipose Nuclei	Adipose
36	chr7:69246200-69246800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr7:69246200-69246800	Enhancers	Brain Hippocampus Middle	brain
38	chr7:69246200-69247400	Enhancers	Psoas Muscle	Psoas
39	chr7:69246200-69248200	Enhancers	Fetal Muscle Trunk	muscle
40	chr7:69246200-69249000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:69246200-69250000	Enhancers	Ovary	ovary
42	chr7:69246200-69250600	Enhancers	Fetal Brain Female	brain
43	chr7:69246400-69246800	Active TSS	Fetal Brain Male	brain
44	chr7:69246400-69247000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:69246400-69247000	Enhancers	Osteobl	bone
46	chr7:69246400-69247200	Enhancers	Lung	lung
47	chr7:69246400-69247200	Enhancers	Small Intestine	intestine
48	chr7:69246400-69247600	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr7:69246400-69248200	Weak transcription	HSMM	muscle
50	chr7:69246400-69249800	Enhancers	Fetal Lung	lung

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