Variant report

Variant	rs17140913
Chromosome Location	chr7:69269616-69269617
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17140786	1.00[AFR][1000 genomes]
rs17140841	1.00[AFR][1000 genomes]
rs17140892	1.00[AFR][1000 genomes]
rs17141018	1.00[AFR][1000 genomes]
rs35565055	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69253400-69278800	Weak transcription	Fetal Stomach	stomach
2	chr7:69255000-69276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:69265000-69270400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:69265800-69273000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:69265800-69273600	Weak transcription	HSMMtube	muscle
6	chr7:69265800-69282600	Weak transcription	Pancreas	Pancrea
7	chr7:69266000-69270000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:69266000-69270000	Weak transcription	Fetal Lung	lung
9	chr7:69266000-69270600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:69266200-69276600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:69267000-69269800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:69267200-69272600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:69267200-69272600	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:69267200-69275000	Weak transcription	Psoas Muscle	Psoas
15	chr7:69267200-69278400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:69267600-69277200	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:69267800-69279200	Weak transcription	Ovary	ovary
18	chr7:69268200-69272800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:69268200-69278000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:69268400-69269800	Weak transcription	Fetal Intestine Large	intestine
21	chr7:69268400-69278200	Weak transcription	Right Atrium	heart
22	chr7:69268600-69270200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr7:69268800-69269800	Weak transcription	Fetal Intestine Small	intestine
24	chr7:69268800-69270600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:69269000-69272400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:69269400-69269800	Enhancers	Primary B cells from peripheral blood	blood
27	chr7:69269400-69269800	Weak transcription	Fetal Brain Male	brain
28	chr7:69269400-69271800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr7:69269600-69270000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr7:69269600-69270200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr7:69269600-69270200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:69269600-69270200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr7:69269600-69270400	Enhancers	Brain Angular Gyrus	brain
34	chr7:69269600-69270800	Flanking Active TSS	GM12878-XiMat	blood

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