Variant report

Variant	rs17142939
Chromosome Location	chr5:117055037-117055038
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1918159	0.83[ASN][1000 genomes]
rs2657043	0.83[ASN][1000 genomes]
rs267019	0.83[ASN][1000 genomes]
rs267059	0.83[ASN][1000 genomes]
rs267060	0.83[ASN][1000 genomes]
rs267062	0.83[ASN][1000 genomes]
rs267063	0.83[ASN][1000 genomes]
rs267064	0.83[ASN][1000 genomes]
rs267065	0.83[ASN][1000 genomes]
rs267066	0.83[ASN][1000 genomes]
rs267068	0.83[ASN][1000 genomes]
rs267069	0.83[ASN][1000 genomes]
rs365600	0.83[ASN][1000 genomes]
rs366335	0.83[ASN][1000 genomes]
rs369130	0.83[ASN][1000 genomes]
rs374057	0.83[ASN][1000 genomes]
rs378387	0.83[ASN][1000 genomes]
rs386139	0.83[ASN][1000 genomes]
rs387069	0.83[ASN][1000 genomes]
rs388253	0.83[ASN][1000 genomes]
rs388643	0.83[ASN][1000 genomes]
rs390818	0.83[ASN][1000 genomes]
rs392437	0.83[ASN][1000 genomes]
rs398793	0.83[ASN][1000 genomes]
rs400845	0.83[ASN][1000 genomes]
rs401607	0.83[ASN][1000 genomes]
rs402131	0.83[ASN][1000 genomes]
rs402578	0.83[ASN][1000 genomes]
rs408218	0.83[ASN][1000 genomes]
rs410212	0.83[ASN][1000 genomes]
rs411705	0.83[ASN][1000 genomes]
rs412087	0.83[ASN][1000 genomes]
rs428812	0.83[ASN][1000 genomes]
rs435028	0.83[ASN][1000 genomes]
rs445048	0.83[ASN][1000 genomes]
rs611501	0.83[ASN][1000 genomes]
rs612365	0.83[ASN][1000 genomes]
rs6897190	0.83[ASN][1000 genomes]
rs6899129	0.83[ASN][1000 genomes]
rs841998	0.83[ASN][1000 genomes]
rs842004	0.83[ASN][1000 genomes]
rs842005	0.83[ASN][1000 genomes]
rs842006	0.83[ASN][1000 genomes]
rs842007	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1027932	chr5:117004237-117061745	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv519949	chr5:117005690-117055145	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv599489	chr5:117042759-117120444	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3369120	chr5:117043102-117066162	Inactive region	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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