Variant report

Variant	rs841998
Chromosome Location	chr5:116993790-116993791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1352587	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs166494	0.84[ASN][1000 genomes]
rs1686411	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1686412	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17142939	0.83[ASN][1000 genomes]
rs1725962	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs174740	0.84[ASN][1000 genomes]
rs197446	0.84[ASN][1000 genomes]
rs2036576	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2036577	0.84[ASN][1000 genomes]
rs2451229	0.85[ASN][1000 genomes]
rs2657043	1.00[ASN][1000 genomes]
rs265862	0.84[ASN][1000 genomes]
rs265904	0.84[ASN][1000 genomes]
rs265908	0.84[ASN][1000 genomes]
rs265909	0.84[ASN][1000 genomes]
rs267019	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267059	1.00[ASN][1000 genomes]
rs267060	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267062	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267063	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267064	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267065	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267066	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267068	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267069	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267073	0.84[ASN][1000 genomes]
rs267074	0.84[ASN][1000 genomes]
rs267075	0.84[ASN][1000 genomes]
rs267077	0.84[ASN][1000 genomes]
rs267078	0.84[ASN][1000 genomes]
rs267084	0.84[ASN][1000 genomes]
rs365600	1.00[ASN][1000 genomes]
rs366335	1.00[ASN][1000 genomes]
rs369130	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs374057	1.00[ASN][1000 genomes]
rs378387	1.00[ASN][1000 genomes]
rs382548	0.92[ASN][1000 genomes]
rs386139	1.00[ASN][1000 genomes]
rs3862062	0.84[ASN][1000 genomes]
rs387069	1.00[ASN][1000 genomes]
rs388253	1.00[ASN][1000 genomes]
rs388643	1.00[ASN][1000 genomes]
rs390818	1.00[ASN][1000 genomes]
rs392437	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs398793	1.00[ASN][1000 genomes]
rs400845	1.00[ASN][1000 genomes]
rs401607	1.00[ASN][1000 genomes]
rs402131	1.00[ASN][1000 genomes]
rs402578	1.00[ASN][1000 genomes]
rs408218	1.00[ASN][1000 genomes]
rs410212	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs411705	1.00[ASN][1000 genomes]
rs412087	1.00[ASN][1000 genomes]
rs423450	0.84[ASN][1000 genomes]
rs428812	1.00[ASN][1000 genomes]
rs431360	0.84[ASN][1000 genomes]
rs435028	1.00[ASN][1000 genomes]
rs441635	0.84[ASN][1000 genomes]
rs445048	1.00[ASN][1000 genomes]
rs584659	0.84[ASN][1000 genomes]
rs611501	1.00[ASN][1000 genomes]
rs612365	1.00[ASN][1000 genomes]
rs636060	0.84[ASN][1000 genomes]
rs6899129	1.00[ASN][1000 genomes]
rs842004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs842005	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs842006	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs842007	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs842010	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs923450	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs923451	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830458	chr5:116831747-117003041	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116993000-116993800	Enhancers	Brain Germinal Matrix	brain
2	chr5:116993200-116993800	Enhancers	Fetal Brain Female	brain

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