Variant report

Variant	rs1686411
Chromosome Location	chr5:117003264-117003265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1352587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1686412	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1725962	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036576	0.81[EUR][1000 genomes]
rs2657043	0.84[ASN][1000 genomes]
rs267019	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs267059	0.84[ASN][1000 genomes]
rs267060	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs267062	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs267063	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs267064	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs267065	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs267066	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs267068	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs267069	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs365600	0.84[ASN][1000 genomes]
rs366335	0.84[ASN][1000 genomes]
rs369130	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs374057	0.84[ASN][1000 genomes]
rs378387	0.84[ASN][1000 genomes]
rs386139	0.84[ASN][1000 genomes]
rs387069	0.84[ASN][1000 genomes]
rs388253	0.84[ASN][1000 genomes]
rs388643	0.84[ASN][1000 genomes]
rs390818	0.84[ASN][1000 genomes]
rs392437	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs398793	0.84[ASN][1000 genomes]
rs400845	0.84[ASN][1000 genomes]
rs401607	0.84[ASN][1000 genomes]
rs402131	0.84[ASN][1000 genomes]
rs402578	0.84[ASN][1000 genomes]
rs408218	0.84[ASN][1000 genomes]
rs410212	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs411705	0.84[ASN][1000 genomes]
rs412087	0.84[ASN][1000 genomes]
rs428812	0.84[ASN][1000 genomes]
rs435028	0.84[ASN][1000 genomes]
rs445048	0.84[ASN][1000 genomes]
rs611501	0.84[ASN][1000 genomes]
rs612365	0.84[ASN][1000 genomes]
rs6899129	0.84[ASN][1000 genomes]
rs841998	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs842004	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs842005	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs842006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs842007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs842010	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs923450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs923451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117001200-117003400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr5:117002600-117003600	Enhancers	Fetal Intestine Small	intestine
3	chr5:117003000-117003600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr5:117003200-117010800	Weak transcription	Fetal Intestine Large	intestine

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