Variant report

Variant	rs842010
Chromosome Location	chr5:116991370-116991371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10036310	1.00[ASN][1000 genomes]
rs10043348	1.00[ASN][1000 genomes]
rs1352587	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1686411	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1686412	0.84[EUR][1000 genomes]
rs1725962	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs267019	0.83[EUR][1000 genomes]
rs267063	0.81[EUR][1000 genomes]
rs267064	0.81[EUR][1000 genomes]
rs267065	0.81[EUR][1000 genomes]
rs267066	0.81[EUR][1000 genomes]
rs267068	0.81[EUR][1000 genomes]
rs267069	0.82[EUR][1000 genomes]
rs392437	0.80[EUR][1000 genomes]
rs410212	0.80[EUR][1000 genomes]
rs841998	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs842004	0.90[EUR][1000 genomes]
rs842005	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs842006	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs842007	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs923450	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs923451	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830458	chr5:116831747-117003041	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116988800-116993200	Weak transcription	Fetal Brain Female	brain
2	chr5:116989000-116993000	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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