Variant report

Variant	rs265862
Chromosome Location	chr5:116896027-116896028
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs166494	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs174740	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197446	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197448	0.86[EUR][1000 genomes]
rs2036576	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036577	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451229	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2657043	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs265904	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs265908	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs265909	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs265924	0.86[EUR][1000 genomes]
rs265925	0.86[EUR][1000 genomes]
rs267019	0.84[ASN][1000 genomes]
rs267059	0.84[ASN][1000 genomes]
rs267060	0.84[ASN][1000 genomes]
rs267062	0.84[ASN][1000 genomes]
rs267063	0.84[ASN][1000 genomes]
rs267064	0.84[ASN][1000 genomes]
rs267065	0.84[ASN][1000 genomes]
rs267066	0.84[ASN][1000 genomes]
rs267068	0.84[ASN][1000 genomes]
rs267069	0.84[ASN][1000 genomes]
rs267073	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267074	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267075	1.00[ASN][1000 genomes]
rs267077	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267078	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267084	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365600	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs366335	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs369130	0.84[ASN][1000 genomes]
rs374057	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs378387	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs382548	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs386139	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3862062	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs387069	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs388253	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs388643	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs390818	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs392437	0.84[ASN][1000 genomes]
rs398793	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs400845	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs401607	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs402131	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs402578	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs408218	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs410212	0.84[ASN][1000 genomes]
rs411705	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs412087	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs423450	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428812	0.84[ASN][1000 genomes]
rs431360	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs435028	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs435524	0.85[EUR][1000 genomes]
rs441635	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs445048	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs448217	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs584659	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs611501	0.84[ASN][1000 genomes]
rs612365	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs636060	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899129	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73262745	0.92[ASN][1000 genomes]
rs841998	0.84[ASN][1000 genomes]
rs842004	0.84[ASN][1000 genomes]
rs842005	0.84[ASN][1000 genomes]
rs842006	0.84[ASN][1000 genomes]
rs842007	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830458	chr5:116831747-117003041	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv882758	chr5:116843143-116905052	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv882759	chr5:116843574-116899938	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv599488	chr5:116857366-116905052	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116894200-116896800	Enhancers	Liver	Liver
2	chr5:116896000-116896200	Enhancers	Fetal Intestine Small	intestine

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