Variant report

Variant	rs17143054
Chromosome Location	chr7:70740588-70740589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1017042	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1017043	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1017044	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17142997	0.90[YRI][hapmap]
rs17143004	0.88[YRI][hapmap]
rs61433826	1.00[AMR][1000 genomes]
rs6951554	1.00[AMR][1000 genomes]
rs6953068	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6953385	1.00[YRI][hapmap]
rs6953581	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6962909	0.87[YRI][hapmap]
rs6978549	0.81[YRI][hapmap]
rs73370009	1.00[AMR][1000 genomes]
rs73370014	1.00[AMR][1000 genomes]
rs73370031	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7793996	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1033155	chr7:70712368-70757929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70732400-70745400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70732400-70755400	Weak transcription	Right Atrium	heart
3	chr7:70733200-70747000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:70734600-70740600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:70735200-70747000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70735800-70742600	Weak transcription	Fetal Brain Male	brain
7	chr7:70736400-70747200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:70738000-70743200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:70738200-70743400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr7:70739200-70740600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:70739400-70742800	Weak transcription	Fetal Heart	heart
12	chr7:70739600-70741000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:70739600-70742800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:70739600-70745800	Weak transcription	Right Ventricle	heart
15	chr7:70739800-70742600	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:70739800-70750600	Weak transcription	Fetal Muscle Leg	muscle
17	chr7:70740000-70745000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:70740000-70751600	Weak transcription	Left Ventricle	heart
19	chr7:70740200-70741200	Enhancers	Ovary	ovary
20	chr7:70740400-70740800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links