Variant report

Variant	rs6951554
Chromosome Location	chr7:70731327-70731328
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1017042	1.00[AMR][1000 genomes]
rs1017043	1.00[AMR][1000 genomes]
rs1017044	1.00[AMR][1000 genomes]
rs17143004	0.82[AFR][1000 genomes]
rs17143054	1.00[AMR][1000 genomes]
rs61433826	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6953068	1.00[AMR][1000 genomes]
rs6953581	1.00[AMR][1000 genomes]
rs6962909	0.84[AFR][1000 genomes]
rs6968577	0.84[AFR][1000 genomes]
rs6978549	0.84[AFR][1000 genomes]
rs73370009	1.00[AMR][1000 genomes]
rs73370014	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370031	1.00[AMR][1000 genomes]
rs7793996	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1033155	chr7:70712368-70757929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70710400-70731800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:70721000-70731800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:70723000-70731600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70729200-70733800	Weak transcription	Left Ventricle	heart
5	chr7:70729400-70736200	Weak transcription	Ovary	ovary
6	chr7:70730800-70731400	Weak transcription	Fetal Heart	heart
7	chr7:70730800-70734400	Weak transcription	Fetal Lung	lung
8	chr7:70731000-70731800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:70731200-70731600	Weak transcription	Aorta	Aorta
10	chr7:70731200-70731800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:70731200-70731800	Enhancers	Right Ventricle	heart
12	chr7:70731200-70732400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:70731200-70732600	Enhancers	Colon Smooth Muscle	Colon
14	chr7:70731200-70734400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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