Variant report

Variant	rs17143860
Chromosome Location	chr7:21138881-21138882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12665947	1.00[AMR][1000 genomes]
rs12671297	1.00[AMR][1000 genomes]
rs12672762	1.00[AMR][1000 genomes]
rs12674300	1.00[AMR][1000 genomes]
rs16872659	1.00[AMR][1000 genomes]
rs16872681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872692	1.00[AMR][1000 genomes]
rs17143826	1.00[AMR][1000 genomes]
rs17143829	1.00[AMR][1000 genomes]
rs17143840	1.00[AMR][1000 genomes]
rs17143848	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17143868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17143883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17143886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17143902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17143906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17144165	1.00[AMR][1000 genomes]
rs17144175	1.00[AMR][1000 genomes]
rs1987514	1.00[AMR][1000 genomes]
rs2390476	1.00[AMR][1000 genomes]
rs34111257	1.00[AMR][1000 genomes]
rs4140957	1.00[AMR][1000 genomes]
rs4140958	1.00[AMR][1000 genomes]
rs4719643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4719659	1.00[AMR][1000 genomes]
rs4721983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4721987	1.00[AMR][1000 genomes]
rs4721989	1.00[AMR][1000 genomes]
rs4721990	1.00[AMR][1000 genomes]
rs56735308	1.00[AMR][1000 genomes]
rs58578432	1.00[AMR][1000 genomes]
rs59800774	1.00[EUR][1000 genomes]
rs60488575	1.00[AMR][1000 genomes]
rs61642822	1.00[AMR][1000 genomes]
rs73685049	1.00[AMR][1000 genomes]
rs964303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830920	chr7:21014535-21201580	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3478244	chr7:21044211-21417347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3478245	chr7:21044211-21417347	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1020852	chr7:21060791-21375050	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538799	chr7:21060791-21375050	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1026437	chr7:21119574-21162026	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv464407	chr7:21122097-21162026	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv606404	chr7:21122097-21162026	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21127400-21139400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:21133400-21141000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:21133600-21139200	Weak transcription	Gastric	stomach
4	chr7:21134600-21139000	Weak transcription	HMEC	breast
5	chr7:21138800-21139600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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