Variant report

Variant	rs17143902
Chromosome Location	chr7:21166006-21166007
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21165568..21168346-chr7:21168839..21171370,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12665947	1.00[AMR][1000 genomes]
rs12671297	1.00[AMR][1000 genomes]
rs12672762	1.00[AMR][1000 genomes]
rs12674300	1.00[AMR][1000 genomes]
rs16872659	1.00[AMR][1000 genomes]
rs16872681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872692	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17143826	1.00[AMR][1000 genomes]
rs17143829	1.00[AMR][1000 genomes]
rs17143840	1.00[AMR][1000 genomes]
rs17143848	1.00[AMR][1000 genomes]
rs17143860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17143868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17143883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17143886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17143906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17144165	1.00[AMR][1000 genomes]
rs17144175	1.00[AMR][1000 genomes]
rs17144266	1.00[AMR][1000 genomes]
rs1987514	1.00[AMR][1000 genomes]
rs2390476	1.00[AMR][1000 genomes]
rs34111257	1.00[AMR][1000 genomes]
rs4140957	1.00[AMR][1000 genomes]
rs4140958	1.00[AMR][1000 genomes]
rs4719643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4719659	1.00[AMR][1000 genomes]
rs4721983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4721987	1.00[AMR][1000 genomes]
rs4721989	1.00[AMR][1000 genomes]
rs4721990	1.00[AMR][1000 genomes]
rs56735308	1.00[AMR][1000 genomes]
rs58578432	1.00[AMR][1000 genomes]
rs59800774	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60488575	1.00[AMR][1000 genomes]
rs61642822	1.00[AMR][1000 genomes]
rs73682328	1.00[AMR][1000 genomes]
rs73685049	1.00[AMR][1000 genomes]
rs964303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830920	chr7:21014535-21201580	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3478244	chr7:21044211-21417347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3478245	chr7:21044211-21417347	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1020852	chr7:21060791-21375050	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538799	chr7:21060791-21375050	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21148800-21167600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:21163400-21168000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:21164000-21166400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
4	chr7:21164200-21166600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr7:21164400-21166600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr7:21164400-21168000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:21165000-21166200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr7:21165000-21166600	Enhancers	HMEC	breast
9	chr7:21165000-21166600	Enhancers	NHEK	skin
10	chr7:21165200-21166400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr7:21165400-21167800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:21165600-21170000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:21165800-21166200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr7:21165800-21166400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr7:21165800-21167000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr7:21166000-21167800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:21166000-21167800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:21166000-21167800	Enhancers	Brain Germinal Matrix	brain
19	chr7:21166000-21168000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:21166000-21168000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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