Variant report

Variant	rs17144732
Chromosome Location	chr5:118180273-118180274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1156413	1.00[AMR][1000 genomes]
rs12108713	1.00[ASN][1000 genomes]
rs12109512	1.00[ASN][1000 genomes]
rs12109542	1.00[ASN][1000 genomes]
rs12109733	1.00[ASN][1000 genomes]
rs12109968	1.00[ASN][1000 genomes]
rs12109982	1.00[ASN][1000 genomes]
rs12109987	1.00[ASN][1000 genomes]
rs12109992	1.00[ASN][1000 genomes]
rs1366457	1.00[ASN][1000 genomes]
rs1397582	1.00[AMR][1000 genomes]
rs1397583	1.00[AMR][1000 genomes]
rs1473231	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1510969	1.00[ASN][1000 genomes]
rs1510975	1.00[AMR][1000 genomes]
rs17144532	1.00[AMR][1000 genomes]
rs17144539	1.00[AMR][1000 genomes]
rs17144540	1.00[AMR][1000 genomes]
rs17144549	1.00[AMR][1000 genomes]
rs17144571	0.81[AMR][1000 genomes]
rs17144580	1.00[AMR][1000 genomes]
rs17144602	0.90[AMR][1000 genomes]
rs17144623	1.00[AMR][1000 genomes]
rs17144624	1.00[AMR][1000 genomes]
rs17144636	1.00[AMR][1000 genomes]
rs17144640	1.00[AMR][1000 genomes]
rs17144648	1.00[AMR][1000 genomes]
rs17144657	1.00[AMR][1000 genomes]
rs17144664	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17144680	1.00[ASN][1000 genomes]
rs17144684	1.00[ASN][1000 genomes]
rs17144687	1.00[ASN][1000 genomes]
rs17144694	1.00[ASN][1000 genomes]
rs17144711	1.00[ASN][1000 genomes]
rs17144738	1.00[AMR][1000 genomes]
rs17144744	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17144795	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17144813	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17144818	1.00[AMR][1000 genomes]
rs17164564	1.00[ASN][1000 genomes]
rs34164145	1.00[ASN][1000 genomes]
rs6880225	0.90[AMR][1000 genomes]
rs918389	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv882771	chr5:118170135-118230640	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882772	chr5:118173127-118230640	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882773	chr5:118175640-118241854	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118167800-118186400	Weak transcription	Liver	Liver
2	chr5:118169600-118180800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:118169600-118208600	Weak transcription	Aorta	Aorta
4	chr5:118172200-118188600	Weak transcription	Primary T cells from cord blood	blood
5	chr5:118175400-118186200	Weak transcription	Primary B cells from cord blood	blood
6	chr5:118179400-118182000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr5:118180200-118180400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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