Variant report

Variant	rs1714517
Chromosome Location	chr3:158219626-158219627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1095625	0.93[EUR][1000 genomes]
rs11915781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1193519	0.96[EUR][1000 genomes]
rs1435637	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1520657	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1520662	0.93[EUR][1000 genomes]
rs1520666	0.93[EUR][1000 genomes]
rs1625612	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1656360	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1656362	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1656367	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1656371	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1714508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1714510	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1714512	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1714513	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1714526	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1730038	0.93[EUR][1000 genomes]
rs2956471	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6441191	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6788695	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73170371	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs827105	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs827107	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs827115	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs827116	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs827117	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs827119	0.96[EUR][1000 genomes]
rs827133	0.96[EUR][1000 genomes]
rs827138	0.93[EUR][1000 genomes]
rs827183	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs827189	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1013046	chr3:158176582-158244606	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1014557	chr3:158176582-158251602	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv877690	chr3:158184263-158296916	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2763312	chr3:158193512-158420588	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	esv3446075	chr3:158214299-158241785	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1714517	RSRC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158207200-158221400	Weak transcription	Ovary	ovary
2	chr3:158211600-158221400	Weak transcription	Gastric	stomach
3	chr3:158219200-158219800	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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