Variant report

Variant	rs73170371
Chromosome Location	chr3:158111144-158111145
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1095625	0.87[EUR][1000 genomes]
rs1095631	0.87[EUR][1000 genomes]
rs1095632	0.87[EUR][1000 genomes]
rs1103981	0.87[EUR][1000 genomes]
rs11915781	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1193519	0.90[EUR][1000 genomes]
rs1520657	0.92[EUR][1000 genomes]
rs1520662	0.87[EUR][1000 genomes]
rs1520666	0.87[EUR][1000 genomes]
rs1625612	0.92[EUR][1000 genomes]
rs1656360	0.88[EUR][1000 genomes]
rs1656362	0.93[EUR][1000 genomes]
rs1656367	0.93[EUR][1000 genomes]
rs1656371	0.93[EUR][1000 genomes]
rs1714508	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1714510	0.93[EUR][1000 genomes]
rs1714512	0.88[EUR][1000 genomes]
rs1714513	0.85[EUR][1000 genomes]
rs1714517	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1714526	0.93[EUR][1000 genomes]
rs1724650	0.87[EUR][1000 genomes]
rs1730038	0.87[EUR][1000 genomes]
rs2956471	0.88[EUR][1000 genomes]
rs6441191	0.92[EUR][1000 genomes]
rs6788695	0.92[EUR][1000 genomes]
rs698978	0.87[EUR][1000 genomes]
rs7651712	0.83[EUR][1000 genomes]
rs827103	0.87[EUR][1000 genomes]
rs827105	0.92[EUR][1000 genomes]
rs827107	0.92[EUR][1000 genomes]
rs827115	0.90[EUR][1000 genomes]
rs827116	0.90[EUR][1000 genomes]
rs827117	0.90[EUR][1000 genomes]
rs827119	0.90[EUR][1000 genomes]
rs827133	0.90[EUR][1000 genomes]
rs827138	0.87[EUR][1000 genomes]
rs827152	0.83[EUR][1000 genomes]
rs827182	0.87[EUR][1000 genomes]
rs827183	0.90[EUR][1000 genomes]
rs827189	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1000904	chr3:158094357-158159317	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1004480	chr3:158102068-158129826	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv536776	chr3:158102068-158129826	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158100800-158113200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:158108000-158111200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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