Variant report

Variant	rs827103
Chromosome Location	chr3:157938844-157938845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1095625	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1095631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1095632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1103981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915781	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1193519	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1520657	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1520662	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1520666	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1589522	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1608099	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1724650	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1724725	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1730038	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680416	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441191	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779266	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788695	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs698978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170371	0.87[EUR][1000 genomes]
rs7651712	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827105	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827107	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827115	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827116	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827117	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827119	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827133	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827138	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827152	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827183	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827189	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845600	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1819976	chr3:157923372-157945591	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs827103	RSRC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157914200-157984400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:157919200-157958000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:157919800-157952800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:157920200-157957000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:157922000-157950000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:157927000-157945200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:157927000-157952600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:157927000-157968800	Weak transcription	Psoas Muscle	Psoas
9	chr3:157928200-157956200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:157929000-157946800	Weak transcription	Dnd41	blood
11	chr3:157933800-157957200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr3:157935000-157951600	Weak transcription	K562	blood
13	chr3:157935600-157950000	Weak transcription	Thymus	Thymus
14	chr3:157935800-157955200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr3:157936800-157950800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr3:157936800-157962000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:157937200-157948600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr3:157937600-157939000	Flanking Active TSS	Fetal Heart	heart
19	chr3:157938000-157956600	Weak transcription	Primary B cells from cord blood	blood
20	chr3:157938200-157939200	Weak transcription	Ovary	ovary
21	chr3:157938200-157959000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr3:157938200-157961800	Weak transcription	Primary T cells from cord blood	blood
23	chr3:157938400-157939400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:157938800-157939000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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