The 2.0 version of rSNPBase

Variant report

Variant rs17146311
Chromosome Location chr7:22177817-22177818
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:22153000-22193000 Strong transcription Dnd41 blood
2 chr7:22155600-22178200 Weak transcription H9 Cell Line embryonic stem cell
3 chr7:22156000-22181000 Weak transcription Gastric stomach
4 chr7:22156000-22186600 Weak transcription Brain Germinal Matrix brain
5 chr7:22156800-22186400 Strong transcription Liver Liver
6 chr7:22159800-22214000 Weak transcription Small Intestine intestine
7 chr7:22160400-22183000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr7:22162200-22181400 Weak transcription Primary T cells from cord blood blood
9 chr7:22162200-22186600 Weak transcription GM12878-XiMat blood
10 chr7:22162200-22198000 Weak transcription Rectal Smooth Muscle rectum
11 chr7:22163000-22179000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr7:22163000-22187800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr7:22163000-22190600 Strong transcription Fetal Thymus thymus
14 chr7:22163200-22178800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr7:22163200-22181000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr7:22163200-22186800 Weak transcription Right Atrium heart
17 chr7:22163600-22179000 Weak transcription iPS-18 Cell Line embryonic stem cell
18 chr7:22165400-22183400 Weak transcription Primary B cells from cord blood blood
19 chr7:22166200-22178000 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr7:22168000-22178000 Weak transcription Adipose Nuclei Adipose
21 chr7:22168000-22195800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr7:22168000-22195800 Weak transcription NHEK skin
23 chr7:22169400-22186600 Weak transcription Stomach Smooth Muscle stomach
24 chr7:22169800-22178800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr7:22169800-22180600 Weak transcription Fetal Kidney kidney
26 chr7:22169800-22181000 Weak transcription Right Ventricle heart
27 chr7:22172200-22182200 Strong transcription Fetal Intestine Large intestine
28 chr7:22173600-22178200 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr7:22174400-22186400 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr7:22174400-22190400 Strong transcription HepG2 liver
31 chr7:22174800-22178000 Strong transcription Brain Anterior Caudate brain
32 chr7:22174800-22179000 Strong transcription iPS-20b Cell Line embryonic stem cell
33 chr7:22175000-22178200 Weak transcription Colonic Mucosa Colon
34 chr7:22175200-22181200 Weak transcription Placenta Placenta
35 chr7:22175200-22193600 Weak transcription HUVEC blood vessel
36 chr7:22176000-22178400 Enhancers HSMM muscle
37 chr7:22176000-22182200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr7:22176200-22185600 Genic enhancers Brain Hippocampus Middle brain
39 chr7:22176200-22198200 Weak transcription Skeletal Muscle Male skeletal muscle
40 chr7:22176400-22178400 Enhancers NHDF-Ad bronchial
41 chr7:22176400-22179000 Genic enhancers Brain Dorsolateral Prefrontal Cortex brain
42 chr7:22176400-22185600 Strong transcription Rectal Mucosa Donor 31 rectum
43 chr7:22176400-22186800 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr7:22176400-22203200 Weak transcription Stomach Mucosa stomach
45 chr7:22176600-22178000 Flanking Active TSS HSMMtube muscle
46 chr7:22176600-22183600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr7:22176600-22184600 Strong transcription Duodenum Mucosa Duodenum
48 chr7:22176800-22184800 Genic enhancers Brain Inferior Temporal Lobe brain
49 chr7:22177000-22178400 Enhancers NHLF lung
50 chr7:22177000-22182800 Strong transcription Thymus Thymus

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Last update: Aug 31, 2015