The 2.0 version of rSNPBase

Variant report

Variant rs6960007
Chromosome Location chr7:22183917-22183918
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:22153000-22193000 Strong transcription Dnd41 blood
2 chr7:22156000-22186600 Weak transcription Brain Germinal Matrix brain
3 chr7:22156800-22186400 Strong transcription Liver Liver
4 chr7:22159800-22214000 Weak transcription Small Intestine intestine
5 chr7:22162200-22186600 Weak transcription GM12878-XiMat blood
6 chr7:22162200-22198000 Weak transcription Rectal Smooth Muscle rectum
7 chr7:22163000-22187800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr7:22163000-22190600 Strong transcription Fetal Thymus thymus
9 chr7:22163200-22186800 Weak transcription Right Atrium heart
10 chr7:22168000-22195800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr7:22168000-22195800 Weak transcription NHEK skin
12 chr7:22169400-22186600 Weak transcription Stomach Smooth Muscle stomach
13 chr7:22174400-22186400 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr7:22174400-22190400 Strong transcription HepG2 liver
15 chr7:22175200-22193600 Weak transcription HUVEC blood vessel
16 chr7:22176200-22185600 Genic enhancers Brain Hippocampus Middle brain
17 chr7:22176200-22198200 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr7:22176400-22185600 Strong transcription Rectal Mucosa Donor 31 rectum
19 chr7:22176400-22186800 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr7:22176400-22203200 Weak transcription Stomach Mucosa stomach
21 chr7:22176600-22184600 Strong transcription Duodenum Mucosa Duodenum
22 chr7:22176800-22184800 Genic enhancers Brain Inferior Temporal Lobe brain
23 chr7:22177400-22186600 Weak transcription Ovary ovary
24 chr7:22177800-22185400 Strong transcription Rectal Mucosa Donor 29 rectum
25 chr7:22177800-22195800 Weak transcription HMEC breast
26 chr7:22179000-22186800 Weak transcription Fetal Brain Female brain
27 chr7:22179200-22184000 Weak transcription Colonic Mucosa Colon
28 chr7:22179400-22191400 Weak transcription Fetal Muscle Trunk muscle
29 chr7:22179600-22186400 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr7:22179600-22206600 Weak transcription Fetal Stomach stomach
31 chr7:22180200-22184800 Genic enhancers Brain Substantia Nigra brain
32 chr7:22180800-22185800 Strong transcription Fetal Adrenal Gland Adrenal Gland
33 chr7:22181000-22184600 Genic enhancers Brain Angular Gyrus brain
34 chr7:22181000-22185000 Strong transcription Left Ventricle heart
35 chr7:22181000-22185400 Genic enhancers Brain Cingulate Gyrus brain
36 chr7:22181000-22186600 Weak transcription Fetal Kidney kidney
37 chr7:22181400-22184000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr7:22181400-22184000 Weak transcription Fetal Intestine Small intestine
39 chr7:22181400-22186800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr7:22181400-22192800 Weak transcription Right Ventricle heart
41 chr7:22181400-22193600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
42 chr7:22181400-22199000 Weak transcription Gastric stomach
43 chr7:22181800-22184200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr7:22181800-22193200 Weak transcription Placenta Placenta
45 chr7:22182000-22184200 Weak transcription Adipose Nuclei Adipose
46 chr7:22182000-22184200 Enhancers Brain Anterior Caudate brain
47 chr7:22182400-22184200 Weak transcription Fetal Brain Male brain
48 chr7:22182400-22184400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr7:22182600-22184400 Weak transcription Fetal Heart heart
50 chr7:22182600-22186400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015