Variant report

Variant	rs17146362
Chromosome Location	chr7:22224167-22224168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22223272..22225334-chr7:22226478..22228657,2	MCF-7	breast:
2	chr7:22223577..22226016-chr7:22227692..22230056,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12530484	1.00[ASW][hapmap]
rs17146355	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17774699	1.00[ASW][hapmap]
rs4722108	1.00[ASW][hapmap]
rs6954430	0.88[JPT][hapmap]
rs6964787	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6965394	1.00[ASW][hapmap]
rs71526390	0.91[ASN][1000 genomes]
rs955484	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606405	chr7:22202485-22235825	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17146362	FERD3L	cis	cerebellum	SCAN

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
2	chr7:22190000-22232800	Weak transcription	Aorta	Aorta
3	chr7:22193800-22232000	Weak transcription	Adipose Nuclei	Adipose
4	chr7:22194400-22227200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:22194400-22232400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:22207000-22232000	Weak transcription	Fetal Stomach	stomach
7	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
8	chr7:22214600-22232000	Weak transcription	Small Intestine	intestine
9	chr7:22214600-22232400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:22214800-22232600	Weak transcription	NHEK	skin
11	chr7:22215000-22226600	Weak transcription	Esophagus	oesophagus
12	chr7:22215400-22232000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr7:22217400-22229000	Weak transcription	Pancreas	Pancrea
14	chr7:22218400-22226600	Weak transcription	Fetal Intestine Large	intestine
15	chr7:22218400-22227000	Weak transcription	Spleen	Spleen
16	chr7:22218600-22227000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:22218600-22227200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr7:22218600-22227200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:22218600-22227200	Weak transcription	Lung	lung
20	chr7:22218600-22229000	Weak transcription	Fetal Intestine Small	intestine
21	chr7:22218800-22232000	Weak transcription	Thymus	Thymus
22	chr7:22219600-22234600	Weak transcription	Primary T cells from cord blood	blood
23	chr7:22220200-22229600	Weak transcription	Left Ventricle	heart
24	chr7:22220400-22224200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:22220400-22226600	Weak transcription	Liver	Liver
26	chr7:22220600-22226600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr7:22220600-22227200	Weak transcription	Primary B cells from cord blood	blood
28	chr7:22221800-22230200	Weak transcription	Fetal Brain Male	brain
29	chr7:22221800-22232400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:22221800-22233200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr7:22222000-22224200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:22222000-22224600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:22222000-22224800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr7:22222000-22227400	Weak transcription	HepG2	liver
35	chr7:22222000-22229200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr7:22222200-22224200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr7:22222200-22224600	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr7:22222200-22229000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:22222200-22235200	Weak transcription	GM12878-XiMat	blood
40	chr7:22222800-22225400	Genic enhancers	Dnd41	blood
41	chr7:22222800-22230200	Weak transcription	Fetal Brain Female	brain
42	chr7:22223000-22224200	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr7:22223000-22224800	Enhancers	Brain Anterior Caudate	brain
44	chr7:22223200-22232400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr7:22223200-22242600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:22223400-22224200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr7:22223400-22224200	Enhancers	Brain Hippocampus Middle	brain
48	chr7:22223400-22224200	Enhancers	Brain Substantia Nigra	brain
49	chr7:22223400-22224400	Enhancers	Brain Angular Gyrus	brain
50	chr7:22223400-22224600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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