Variant report

Variant	rs17774699
Chromosome Location	chr7:22311040-22311041
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11766861	1.00[MEX][hapmap]
rs12530484	1.00[ASW][hapmap]
rs12537879	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12538623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12700363	1.00[MEX][hapmap]
rs12700364	1.00[MEX][hapmap]
rs17146362	1.00[ASW][hapmap]
rs34349554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4722108	1.00[ASW][hapmap]
rs6965394	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815409	chr7:22296017-22315855	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17774699	APITD1-CORT	trans	lymphoblastoid	seeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22262200-22329000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:22278600-22325800	Weak transcription	Liver	Liver
3	chr7:22282200-22364400	Weak transcription	Esophagus	oesophagus
4	chr7:22309200-22322400	Weak transcription	Primary T cells from cord blood	blood
5	chr7:22309400-22311800	Genic enhancers	Dnd41	blood
6	chr7:22309600-22311600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:22309600-22318400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:22309600-22328600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:22309600-22329000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:22310000-22311400	Weak transcription	Brain Angular Gyrus	brain
11	chr7:22310000-22327000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:22310000-22329000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:22310000-22335600	Weak transcription	Pancreas	Pancrea
14	chr7:22310000-22343400	Weak transcription	Spleen	Spleen
15	chr7:22310200-22311400	Weak transcription	Fetal Intestine Small	intestine
16	chr7:22310200-22311400	Weak transcription	Fetal Thymus	thymus
17	chr7:22310200-22311800	Enhancers	HepG2	liver
18	chr7:22310200-22317200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr7:22310400-22318400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr7:22310800-22311600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr7:22311000-22313600	Weak transcription	Thymus	Thymus
22	chr7:22311000-22315000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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