Variant report

Variant	rs34349554
Chromosome Location	chr7:22321092-22321093
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12537879	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12538623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17774699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22262200-22329000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:22278600-22325800	Weak transcription	Liver	Liver
3	chr7:22282200-22364400	Weak transcription	Esophagus	oesophagus
4	chr7:22309200-22322400	Weak transcription	Primary T cells from cord blood	blood
5	chr7:22309600-22328600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:22309600-22329000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:22310000-22327000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:22310000-22329000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:22310000-22335600	Weak transcription	Pancreas	Pancrea
10	chr7:22310000-22343400	Weak transcription	Spleen	Spleen
11	chr7:22314200-22327600	Weak transcription	Fetal Intestine Large	intestine
12	chr7:22314800-22331600	Weak transcription	Fetal Intestine Small	intestine
13	chr7:22316600-22327200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:22317000-22324200	Genic enhancers	Dnd41	blood
15	chr7:22317600-22327000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr7:22318800-22328200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:22318800-22329000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:22318800-22340200	Weak transcription	Stomach Mucosa	stomach
19	chr7:22319000-22336000	Weak transcription	Lung	lung
20	chr7:22320800-22321800	Genic enhancers	Fetal Thymus	thymus
21	chr7:22320800-22345400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:22321000-22321800	Enhancers	Thymus	Thymus
23	chr7:22321000-22323600	Weak transcription	HepG2	liver
24	chr7:22321000-22341600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:22321000-22346800	Weak transcription	NHEK	skin

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