Variant report

Variant	rs12700363
Chromosome Location	chr7:22274350-22274351
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:22274204..22275923-chr7:22277210..22279208,3	K562	blood:
2	chr7:22273912..22276505-chr7:22288545..22291120,2	MCF-7	breast:
3	chr7:22259444..22261925-chr7:22273770..22275595,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136237	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10282106	0.88[CEU][hapmap]
rs10282222	0.89[CEU][hapmap]
rs10499541	1.00[ASW][hapmap];0.89[CEU][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761102	0.80[CEU][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763898	0.89[CEU][hapmap]
rs11766435	1.00[ASN][1000 genomes]
rs11766861	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773706	0.89[CEU][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530484	0.88[CEU][hapmap]
rs12531808	0.89[CEU][hapmap]
rs12534735	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700364	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222400	0.89[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13230638	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13237958	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419764	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419765	1.00[CEU][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17711941	0.89[CEU][hapmap];0.97[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773555	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17774699	1.00[MEX][hapmap]
rs2079478	0.85[CEU][hapmap]
rs34167821	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34401570	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35430878	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35979304	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4722108	0.89[CEU][hapmap]
rs4722110	0.89[CEU][hapmap]
rs56073345	1.00[ASN][1000 genomes]
rs71526391	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526392	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526393	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73683342	1.00[ASN][1000 genomes]
rs73683348	1.00[ASN][1000 genomes]
rs73683355	1.00[ASN][1000 genomes]
rs7803094	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810806	0.89[CEU][hapmap]
rs9886139	0.89[CEU][hapmap]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
2	chr7:22259000-22276400	Weak transcription	Esophagus	oesophagus
3	chr7:22259800-22281600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:22260800-22278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:22260800-22281400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:22262200-22329000	Weak transcription	Primary B cells from cord blood	blood
7	chr7:22262400-22279200	Weak transcription	GM12878-XiMat	blood
8	chr7:22263000-22276200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:22263400-22281600	Weak transcription	Fetal Intestine Large	intestine
10	chr7:22264400-22277200	Weak transcription	Pancreas	Pancrea
11	chr7:22264400-22291000	Weak transcription	Lung	lung
12	chr7:22264800-22276200	Weak transcription	Fetal Intestine Small	intestine
13	chr7:22267600-22275800	Strong transcription	HepG2	liver
14	chr7:22267800-22280600	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:22268800-22276800	Weak transcription	Right Ventricle	heart
16	chr7:22269400-22281800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:22270200-22277200	Weak transcription	Fetal Thymus	thymus
18	chr7:22270200-22283800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:22271000-22275600	Weak transcription	Dnd41	blood
20	chr7:22271800-22289400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr7:22271800-22290000	Weak transcription	Brain Anterior Caudate	brain
22	chr7:22272000-22290000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr7:22273600-22274400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:22273600-22274400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:22273600-22274400	Enhancers	Brain Substantia Nigra	brain
26	chr7:22273600-22274400	Enhancers	Osteobl	bone
27	chr7:22273800-22274400	Enhancers	K562	blood
28	chr7:22274000-22274400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:22274000-22274400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr7:22274000-22274400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr7:22274000-22274400	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr7:22274000-22274400	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr7:22274000-22274400	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr7:22274000-22274600	Enhancers	Liver	Liver
35	chr7:22274000-22274800	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr7:22274000-22275000	Enhancers	H1 Cell Line	embryonic stem cell
37	chr7:22274200-22275600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr7:22274200-22285800	Weak transcription	Gastric	stomach
39	chr7:22274200-22289400	Weak transcription	Brain Angular Gyrus	brain

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