Variant report

Variant	rs12534735
Chromosome Location	chr7:22259306-22259307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10499541	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761102	1.00[ASN][1000 genomes]
rs11766435	1.00[ASN][1000 genomes]
rs11766861	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773706	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700363	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700364	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222400	1.00[ASN][1000 genomes]
rs13230638	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13237958	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419764	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419765	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17711941	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773555	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34167821	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34401570	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35430878	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35979304	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56073345	1.00[ASN][1000 genomes]
rs71526391	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526392	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526393	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73683342	1.00[ASN][1000 genomes]
rs73683348	1.00[ASN][1000 genomes]
rs73683355	1.00[ASN][1000 genomes]
rs7803094	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22235600-22260600	Weak transcription	GM12878-XiMat	blood
2	chr7:22238000-22264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:22241000-22267800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
5	chr7:22244600-22259800	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:22250800-22259400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:22250800-22261800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:22252400-22264000	Weak transcription	Spleen	Spleen
9	chr7:22253800-22260200	Active TSS	Adipose Nuclei	Adipose
10	chr7:22254000-22274000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:22254600-22260800	Active TSS	Right Atrium	heart
12	chr7:22254600-22274000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:22255400-22260000	Active TSS	Right Ventricle	heart
14	chr7:22256000-22259800	Active TSS	Psoas Muscle	Psoas
15	chr7:22256200-22260000	Active TSS	Left Ventricle	heart
16	chr7:22256200-22260000	Active TSS	Lung	lung
17	chr7:22256200-22260200	Flanking Active TSS	HUVEC	blood vessel
18	chr7:22256200-22264000	Weak transcription	Pancreas	Pancrea
19	chr7:22256200-22264600	Strong transcription	Dnd41	blood
20	chr7:22256400-22259800	Active TSS	Ovary	ovary
21	chr7:22256600-22259800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
22	chr7:22256600-22259800	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr7:22256800-22259600	Active TSS	Fetal Kidney	kidney
24	chr7:22256800-22259800	Active TSS	Aorta	Aorta
25	chr7:22256800-22259800	Active TSS	Fetal Muscle Leg	muscle
26	chr7:22256800-22259800	Weak transcription	Osteobl	bone
27	chr7:22256800-22260200	Active TSS	Stomach Smooth Muscle	stomach
28	chr7:22257000-22259600	Active TSS	Brain Angular Gyrus	brain
29	chr7:22257000-22259600	Active TSS	Brain Anterior Caudate	brain
30	chr7:22257000-22260000	Active TSS	Placenta	Placenta
31	chr7:22257200-22259800	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr7:22257200-22259800	Strong transcription	HepG2	liver
33	chr7:22257800-22259400	Active TSS	Brain Cingulate Gyrus	brain
34	chr7:22257800-22259600	Active TSS	Brain Inferior Temporal Lobe	brain
35	chr7:22257800-22260000	Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr7:22258000-22259600	Active TSS	Brain Hippocampus Middle	brain
37	chr7:22258000-22259800	Active TSS	Fetal Stomach	stomach
38	chr7:22258000-22260600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:22258200-22259600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr7:22258200-22259800	Active TSS	Fetal Muscle Trunk	muscle
41	chr7:22258200-22259800	Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr7:22258400-22259400	Enhancers	NHEK	skin
43	chr7:22258400-22259800	Active TSS	Liver	Liver
44	chr7:22258400-22259800	Active TSS	Fetal Intestine Small	intestine
45	chr7:22258600-22260200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr7:22258800-22259400	Weak transcription	Brain Substantia Nigra	brain
47	chr7:22258800-22260000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:22258800-22260800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:22258800-22260800	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr7:22258800-22262000	Weak transcription	Primary B cells from cord blood	blood

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