Variant report

Variant	rs73683355
Chromosome Location	chr7:22379085-22379086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22377860..22380103-chr7:22388020..22389955,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10499541	1.00[ASN][1000 genomes]
rs11761102	1.00[ASN][1000 genomes]
rs11766435	1.00[ASN][1000 genomes]
rs11766861	1.00[ASN][1000 genomes]
rs11773706	1.00[ASN][1000 genomes]
rs12534735	1.00[ASN][1000 genomes]
rs12700363	1.00[ASN][1000 genomes]
rs12700364	1.00[ASN][1000 genomes]
rs13222400	1.00[ASN][1000 genomes]
rs13230638	1.00[ASN][1000 genomes]
rs13237958	1.00[ASN][1000 genomes]
rs1419764	1.00[ASN][1000 genomes]
rs1419765	1.00[ASN][1000 genomes]
rs17711941	1.00[ASN][1000 genomes]
rs17773555	1.00[ASN][1000 genomes]
rs34167821	1.00[ASN][1000 genomes]
rs34401570	1.00[ASN][1000 genomes]
rs35430878	1.00[ASN][1000 genomes]
rs56073345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57886176	0.89[AFR][1000 genomes]
rs71526391	1.00[ASN][1000 genomes]
rs71526392	1.00[ASN][1000 genomes]
rs71526393	1.00[ASN][1000 genomes]
rs73683342	1.00[ASN][1000 genomes]
rs73683348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73683356	0.92[AFR][1000 genomes]
rs73683357	0.96[AFR][1000 genomes]
rs7803094	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1792359	chr7:22377636-22391198	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22369400-22394800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:22370000-22383800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:22370000-22384000	Weak transcription	Spleen	Spleen
4	chr7:22370200-22390400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:22370400-22380200	Weak transcription	Brain Angular Gyrus	brain
6	chr7:22370800-22384000	Weak transcription	Left Ventricle	heart
7	chr7:22372200-22383800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:22372600-22384400	Weak transcription	NHEK	skin
9	chr7:22373400-22379200	Genic enhancers	HepG2	liver
10	chr7:22373400-22381400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr7:22373400-22384400	Weak transcription	Thymus	Thymus
12	chr7:22373800-22380400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:22373800-22383800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:22374800-22380200	Weak transcription	Fetal Intestine Large	intestine
15	chr7:22375200-22381400	Weak transcription	Esophagus	oesophagus
16	chr7:22375400-22380000	Weak transcription	Stomach Mucosa	stomach
17	chr7:22376400-22379400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr7:22377000-22379400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:22377200-22380200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr7:22377200-22386600	Enhancers	Liver	Liver
21	chr7:22377400-22379200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr7:22377400-22379600	Weak transcription	Fetal Intestine Small	intestine
23	chr7:22377800-22379400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr7:22378200-22379200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr7:22378400-22379200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr7:22378400-22380400	Enhancers	Lung	lung
27	chr7:22378400-22380800	Genic enhancers	Fetal Thymus	thymus
28	chr7:22378400-22381200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr7:22378400-22382000	Enhancers	Pancreas	Pancrea
30	chr7:22378600-22379400	Enhancers	H1 Cell Line	embryonic stem cell
31	chr7:22378600-22380600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr7:22378800-22379400	Enhancers	Duodenum Mucosa	Duodenum
33	chr7:22379000-22380000	Weak transcription	Brain Anterior Caudate	brain
34	chr7:22379000-22380000	Weak transcription	Dnd41	blood
35	chr7:22379000-22381200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:22379000-22381600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr7:22379000-22384800	Weak transcription	K562	blood

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