Variant report

Variant	rs73683356
Chromosome Location	chr7:22380031-22380032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22377860..22380103-chr7:22388020..22389955,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56073345	0.92[AFR][1000 genomes]
rs57886176	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73683348	0.92[AFR][1000 genomes]
rs73683355	0.92[AFR][1000 genomes]
rs73683357	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1792359	chr7:22377636-22391198	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22369400-22394800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:22370000-22383800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:22370000-22384000	Weak transcription	Spleen	Spleen
4	chr7:22370200-22390400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:22370400-22380200	Weak transcription	Brain Angular Gyrus	brain
6	chr7:22370800-22384000	Weak transcription	Left Ventricle	heart
7	chr7:22372200-22383800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:22372600-22384400	Weak transcription	NHEK	skin
9	chr7:22373400-22381400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:22373400-22384400	Weak transcription	Thymus	Thymus
11	chr7:22373800-22380400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:22373800-22383800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:22374800-22380200	Weak transcription	Fetal Intestine Large	intestine
14	chr7:22375200-22381400	Weak transcription	Esophagus	oesophagus
15	chr7:22377200-22380200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr7:22377200-22386600	Enhancers	Liver	Liver
17	chr7:22378400-22380400	Enhancers	Lung	lung
18	chr7:22378400-22380800	Genic enhancers	Fetal Thymus	thymus
19	chr7:22378400-22381200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr7:22378400-22382000	Enhancers	Pancreas	Pancrea
21	chr7:22378600-22380600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr7:22379000-22381200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:22379000-22381600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:22379000-22384800	Weak transcription	K562	blood
25	chr7:22379200-22380200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:22379200-22380200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr7:22379200-22380200	Strong transcription	HepG2	liver
28	chr7:22379200-22381600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:22379400-22380200	Enhancers	Primary B cells from peripheral blood	blood
30	chr7:22379400-22381200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr7:22379400-22381400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:22379600-22382000	ZNF genes & repeats	Fetal Intestine Small	intestine
33	chr7:22380000-22380200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:22380000-22380200	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr7:22380000-22380200	Enhancers	Brain Anterior Caudate	brain
36	chr7:22380000-22380400	Genic enhancers	Dnd41	blood
37	chr7:22380000-22380600	Enhancers	Stomach Mucosa	stomach
38	chr7:22380000-22380600	ZNF genes & repeats	GM12878-XiMat	blood
39	chr7:22380000-22392200	Weak transcription	Primary B cells from cord blood	blood

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