Variant report

Variant	rs17773555
Chromosome Location	chr7:22264037-22264038
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10282106	0.87[CEU][hapmap]
rs10282222	0.87[CEU][hapmap]
rs10499541	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761102	0.86[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763898	0.87[CEU][hapmap]
rs11766435	1.00[ASN][1000 genomes]
rs11766861	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773706	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530484	0.85[CEU][hapmap]
rs12531808	1.00[CEU][hapmap]
rs12534735	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700363	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700364	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222400	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs13230638	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13237958	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419764	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419765	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17711941	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2390633	0.85[CEU][hapmap]
rs34167821	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34401570	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35430878	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35979304	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4722108	0.86[CEU][hapmap]
rs4722110	0.87[CEU][hapmap]
rs56073345	1.00[ASN][1000 genomes]
rs6965394	0.86[CEU][hapmap]
rs71526391	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526392	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526393	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73683342	1.00[ASN][1000 genomes]
rs73683348	1.00[ASN][1000 genomes]
rs73683355	1.00[ASN][1000 genomes]
rs7803094	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810806	0.86[CEU][hapmap]
rs9886139	0.87[CEU][hapmap]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22238000-22264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:22241000-22267800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
4	chr7:22254000-22274000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:22254600-22274000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:22256200-22264600	Strong transcription	Dnd41	blood
7	chr7:22259000-22270600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:22259000-22276400	Weak transcription	Esophagus	oesophagus
9	chr7:22259800-22281600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:22260000-22264200	Weak transcription	Left Ventricle	heart
11	chr7:22260000-22265000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:22260000-22268600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:22260000-22269400	Weak transcription	Brain Anterior Caudate	brain
14	chr7:22260000-22269400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:22260600-22266200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:22260800-22267200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr7:22260800-22268600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:22260800-22278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:22260800-22281400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:22261800-22265200	Strong transcription	HepG2	liver
21	chr7:22262200-22329000	Weak transcription	Primary B cells from cord blood	blood
22	chr7:22262400-22269400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:22262400-22279200	Weak transcription	GM12878-XiMat	blood
24	chr7:22262800-22264400	Enhancers	Brain Substantia Nigra	brain
25	chr7:22262800-22268000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:22263000-22274000	Weak transcription	Liver	Liver
27	chr7:22263000-22276200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr7:22263200-22264400	Enhancers	Brain Hippocampus Middle	brain
29	chr7:22263400-22264400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:22263400-22268400	Weak transcription	Fetal Thymus	thymus
31	chr7:22263400-22281600	Weak transcription	Fetal Intestine Large	intestine
32	chr7:22263600-22270000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:22264000-22264400	Enhancers	Aorta	Aorta
34	chr7:22264000-22264400	Enhancers	Placenta	Placenta
35	chr7:22264000-22264400	Enhancers	Lung	lung
36	chr7:22264000-22264400	Genic enhancers	Pancreas	Pancrea
37	chr7:22264000-22264400	Enhancers	Spleen	Spleen
38	chr7:22264000-22264800	Strong transcription	Fetal Intestine Small	intestine
39	chr7:22264000-22267600	Weak transcription	Brain Angular Gyrus	brain

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