Variant report

Variant	rs12531808
Chromosome Location	chr7:22285284-22285285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10499541	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761102	0.90[CEU][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766435	1.00[ASN][1000 genomes]
rs11766861	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs11773706	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534735	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700363	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs12700364	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs13222400	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13230638	1.00[ASN][1000 genomes]
rs13237958	1.00[ASN][1000 genomes]
rs1419764	1.00[ASN][1000 genomes]
rs1419765	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs17711941	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773555	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34167821	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34401570	0.97[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35430878	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073345	1.00[ASN][1000 genomes]
rs71526391	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526392	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526393	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73683342	1.00[ASN][1000 genomes]
rs73683348	1.00[ASN][1000 genomes]
rs73683355	1.00[ASN][1000 genomes]
rs7803094	0.89[CEU][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
2	chr7:22262200-22329000	Weak transcription	Primary B cells from cord blood	blood
3	chr7:22264400-22291000	Weak transcription	Lung	lung
4	chr7:22271800-22289400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:22271800-22290000	Weak transcription	Brain Anterior Caudate	brain
6	chr7:22272000-22290000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:22274200-22285800	Weak transcription	Gastric	stomach
8	chr7:22274200-22289400	Weak transcription	Brain Angular Gyrus	brain
9	chr7:22274400-22288000	Weak transcription	Brain Substantia Nigra	brain
10	chr7:22274400-22291000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:22275000-22290800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:22275600-22286000	Strong transcription	Dnd41	blood
13	chr7:22276200-22285800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:22276600-22295600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:22278600-22325800	Weak transcription	Liver	Liver
16	chr7:22278800-22310800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:22279000-22297000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:22281800-22289600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr7:22281800-22291000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr7:22282200-22285800	Weak transcription	Fetal Intestine Large	intestine
21	chr7:22282200-22285800	Weak transcription	Fetal Thymus	thymus
22	chr7:22282200-22295000	Weak transcription	Spleen	Spleen
23	chr7:22282200-22298600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:22282200-22309000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:22282200-22364400	Weak transcription	Esophagus	oesophagus
26	chr7:22282400-22286800	Weak transcription	Fetal Intestine Small	intestine
27	chr7:22282400-22290800	Weak transcription	Pancreas	Pancrea
28	chr7:22282800-22287000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:22282800-22290800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:22283800-22290800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:22285000-22292600	Weak transcription	HepG2	liver

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